Comparative Genomics in Bacteria
Computational Biology Methods and Their Application to the Comparative Genomics of Endocellular Symbiotic Bacteria of Insects
... of comparative genomics acquires another dimension and complex- ity specifically associated to the mutational dynamics of these ...symbiotic bacteria: the facultative and the ...the ...
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Comparative Genomics via Wavelet Analysis for Closely Related Bacteria
... Comparative genomics has been a valuable method for extracting and extrapolating genome information among closely related ...of bacteria strains; it could be a quantitative index to describe the ...
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Computational Biology Methods and Their Application to the Comparative Genomics of Endocellular Symbiotic Bacteria of Insects
... Mutations in nuclear genes involved in mtDNA maintenance Accelerated ageing with symptoms Mutator mice: mutation in POLG including mitochondrial dysfunction, apoptosis, skeletal muscle l[r] ...
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<p>In vitro reduction of colistin susceptibility and comparative genomics reveals multiple differences between MCR-positive and MCR-negative colistin-resistant <em>Escherichia coli</em></p>
... The interest in colistin (polymyxin E) as a treatment option and antibiotic of last resort has been revived, since the increasing incidence of infections caused by multidrug-resistant Gram-negative bacteria in ...
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Molecular Aspects and Comparative Genomics of Bacteriophage Endolysins
... GH25, and GH108 (EC 3.2.1.17), are a structurally diverse set of phage endolysin members with the same lysozyme activity cleav- ing the MurNAc-N-GlcNAc bond of the carbohydrate backbone. GH24 is the most predominant PGH, ...
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Protein domain evolution by comparative genomics
... all bacteria and all Eukaryotes” and “Folds present in all archaea and all bacteria” ...the bacteria notionally branch first there is still enough horizontal transfer occurring to prevent this being ...
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Comparative genomics of the skin Staphylococci
... certain bacteria to acquire genes from outside of their own species (Johnsborg et ...described bacteria can readily incorporate naked, foreign DNA, including plasmid DNA or mobile genetic elements, and the ...
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Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections
... of bacteria was added to 270 l of 50% human serum in a 96-well microtiter plate in triplicates, and 30 l of sample was taken out and plated on LB agar plates after ...The bacteria were enumerated after ...
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Comparative genomics of bacteriophage of the genus Seuratvirus
... The presence of queuosine genes is a signature found in all genomes of the genus Seuratvirus. The conserved order of these genes and the presence of the same genes colocalized in other bacteriophages suggests they may be ...
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On the Road to Strain-Resolved Comparative Metagenomics
... strain-level comparative genomics and epidemiology of underinvestigated and hard- to-cultivate strains reconstructed from the whole set of available human ...population genomics and biogeography ...
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Comparative Genomics of Antibiotic Resistant Uropathogens Implicates Three Routes for Recurrence of Urinary Tract Infections
... of bacteria associated with UTIs are frequently resistant to the most commonly used drugs (6), and plasmids carrying the genes for extended-spectrum  -lactamases (ESBLs) have rapidly spread within the ...
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A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sediments
... clostridial bacterium involved in anaerobic GBT degradation in a coastal saltmarsh sediment... Phylogenetic analyses, metabolic reconstruction from MAGs and comparative genomics.[r] ...
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REVIEW ON COMPARATIVE GENOMICS FOR MYCOBACTERIUM TUBERCULOSIS STRAINS
... Mycobacterium tuberculosis: M. tuberculosis is a highly contagious, airborne, slow-growing, Gram- positive, aerobic, rod-shaped, acid-fast bacillus. The cell wall has high lipid content and allows the bacteria to ...
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Comparative Genomics of Bacillus thuringiensis Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
... nonpathogenic bacteria, and the taxonomic range of hosts susceptible to this group strains includes three phyla (Arthropoda, Nematoda, Chordata) (15, 16), making this group a powerful system for investigating the ...
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Molecular characteristics and comparative genomics analysis of a clinical <em>Enterococcus casseliflavus</em> with a resistance plasmid
... the bacteria from the National Center for Biotechnology Information (NCBI) nucleotide database by BlastN and BlastP programs ...The bacteria and plasmids used in this work are listed in Table ...
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Ethanolamine Utilization in Bacteria
... a comparative genomics study that had identified the binding sequence by finding conserved promoter elements, which was in a region just upstream of the ⫺ 35 position ...
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Comparative Genomics of Early Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway
... other bacteria (28) and catalyze the conversion of glucose-1- phosphate to dTDP-l-rhamnose ...Gram-negative bacteria, and dTDP-l-rhamnose is an immediate precursor of the rhamnose moiety in the O-antigen ...
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Whole Genome Sequence and Comparative Genomics Analysis of Multi drug Resistant Environmental Staphylococcus epidermidis ST59
... these bacteria are an important reservoir of antimicrobial resistance genes and resistance-associated mobile genetic elements that can be transferred between staphylococcal ...chromosome. Comparative ...
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A New Genomics Driven Taxonomy of Bacteria and Archaea: Are We There Yet?
... species with validly published names reveals that the distribution of pairwise similarities varies significantly. Many higher taxa are non- normally distributed, especially at the genus level (see Fig. 4S posted at ...
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Genomics and Phylogeny of Probiotic Lactic Acid Bacteria Used in Industry.
... It was originally documented in 1892 that the presence of Lactobacillus is the hallmark of a healthy vaginal microbiome [1]. However, it took over a century and the establishment of the Human Microbiome Project (HMP) in ...
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