differentially expressed genes
Identification of aberrantly methylated differentially expressed genes targeted by differentially expressed miRNA in osteosarcoma
... several differentially methylated genes (DMGs) and differentially expressed genes (DEGs) in OS through bioinformatics analysis ...and differentially expressed miRNAs ...
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IDENTIFICATION OF DIFFERENTIALLY EXPRESSED GENES USING BI CLUSTERING
... the genes into homogeneous clusters they are differentially expressed and non-differentially obtained from various clustering techniques for different data ...selecting differentially ...
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Analysis of Differentially Expressed Genes in Neuroendocrine Carcinomas of the Lung
... of Differentially Expressed Genes in Neuroendocrine Carcinomas of the Lung Chigusa Okubo, MS,* Yuko Minami, MD,*§ Ryota Tanaka, MD,* 兩兩 Teruhito Uchihara, MD,*¶ Yoichi Anami, MD,* Shuichiroh Furuya, ...
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Aberrantly methylated-differentially expressed genes and pathways in colorectal cancer
... methylated-differentially expressed genes and pathways in CRC by joint bioinformatics analysis of both gene expression and gene methylation microarrays, which may contribute to the finding of ...
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Microarray analysis of differentially expressed genes in the brains of tubby mice.
... target genes of tub- by using microarray analysis and real-time ...the differentially expressed genes that we found are attractive target molecules that could be responsible for tubby mouse ...
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Evaluation of Some Statistical Methods for the Identification of Differentially Expressed Genes
... The focus of the present study is a comparison of the top performing and popular methods SAM, samroc, rank product, and fold change along with modified versions of the SAM method and the fold change rule. As it is ...
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Differentially expressed genes between systemic sclerosis and rheumatoid arthritis
... KEGG pathway enrichment analyses of the identified DEGs demonstrated six key significantly enriched path- ways, including ECM – receptor interaction and primary immunodeficiency, which is in line with the known ...
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Statistical Tests for Identification of Differentially Expressed Genes in Microarray Data
... experiments, differentially expressed genes, or discriminator genes, are the genes with considerably different expression patterns in two user-defined ...of genes, and which ...
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Identification of Differentially Expressed Genes with Artificial Components the acde Package
... regulated genes as the final output of the analysis, we recommend taking U (l ∗ ) and D (l ∗ ) from the first approach as reference, and assessing their behaviour through time using the second ...of ...
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Microarray data quality control improves the detection of differentially expressed genes
... Microarray Quality Outlier Microarrays have become a routine tool for biomedical research. Data quality assessment is an essential part of the analysis, but it is still not easy to perform objectively or in an automated ...
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ORdensity: user-friendly R package to identify differentially expressed genes
... identify differentially expressed ...of genes identified as differentially expressed genes in an easy and comprehensible ...for differentially expressed ...
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Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
... for genes based upon the approximate/asymptotic null ...highly expressed genes but performs poorly for lowly expressed ...of differentially expressed ...expressed ...
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Microarray data analysis: a practical approach for selecting differentially expressed genes
... Differentially expressed genes will be defined herein as gene data lying outside the normal distribution of differences with a control state, and which can not be ascribed to chance or natural ...of ...
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Screening and functional analysis of differentially expressed genes in EBV transformed lymphoblasts
... 1,745 differentially expressed genes were ...multiple genes and pathways in virus-host ...1,745 differentially expressed ...
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Detection of differentially expressed genes in the early developmental stage of the mouse mandible
... any differentially expressed genes which might be involved in the initiation of ...be differentially expressed genes. These genes are functionally related to protein ...
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Identification of differentially expressed genes in the development of osteosarcoma using RNA-seq
... In this study, we used high-throughput RNA- sequencing to obtain mRNA expression data from peripheral blood of normal controls, primary OS and metastatic OS patients and to identify differentially expressed ...
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Data Mining in Networks of Differentially Expressed Genes during Sow Pregnancy
... identify differentially expressed genes in pig granu- losa cells along the terminal ovarian follicle growth and showed in particular the down-regulation of ri- bosomal protein, cell morphology and ...
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Networking of differentially expressed genes in human cancer cells resistant to methotrexate
... of genes differentially expressed by at least twofold between sensitive and resistant cell lines were generated for each cell ...overexpressed genes and the other including the underexpressed ...
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Rapid Selection of Differentially Expressed Genes in TNFα-activated Endothelial Cells
... -responsive genes, were isolated from a cDNA library. One of the genes found upregulated in TNF -activated ECs was the pro-apoptotic member of the Bcl-2 family, ...clone differentially ...
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Effect of hyperoside on cervical cancer cells and transcriptome analysis of differentially expressed genes
... DEGs: differentially expressed genes; TF: transcription factor; GO: gene ontology; BP: biological processes; KEGG: Kyoto Encyclopedia of Gene and Genome; HPV: human papillomavirus; NF-κB: nuclear ...
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