gene expression omnibus
TRIM66 overexpresssion contributes to osteosarcoma carcin ogenesis and indicates poor survival outcome
... the expression and biological function of TRIM66 in ...TRIM66 expression level was higher in osteosarcoma tissues than in normal ...TRIM66 expression was correlated with high rate of local recurrence ...
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Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
... Method: We firstly identified differentially expressed genes (DEGs) between cardiomyopathy patients and controls with data from the gene expression omnibus (GEO) database. DEGs were associated with ...
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Expression profile analysis identifies key genes as prognostic markers for metastasis of osteosarcoma
... the gene expression profiles from Gene Expression Omnibus (GEO) data- sets and determined the differentially expressed genes between metastatic OS samples and non-metastatic ...
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Towards a Toxico-Chemogenomic Future: The Transformation of Public Gene Expression Data and Consideration for its Use.
... public gene expression resources that served as the primary focus of these efforts are the National Center for Biotechnology Information’s (NCBI) Gene Expression Omnibus (GEO) and the ...
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Integrated whole genome microarray analysis and immunohistochemical assay identifies COL11A1, GJB2 and CTRL as predictive biomarkers for pancreatic cancer
... GEO: Gene Expression Omnibus; GSEA: Gene Set Enrichment Analysis; GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; PPI: protein– protein interaction; ROC: receiver ...
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Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
... Weighted gene co-expression network analysis; OS: Overall survival; PFS: Progression-free survival; GEO: The Gene Expression Omnibus; DEGs: Different expression genes; TOM: ...
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Pathprinting: An integrative approach to understand the functional basis of disease
... [5], gene-based cross-species distance metrics have highlighted diseases that activate similar human and mouse pathways [6], and oncogenetic expression signatures have been prioritized by comparing human ...
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Down-regulation of microRNA-144-3p and its clinical value in non-small cell lung cancer: a comprehensive analysis based on microarray, miRNA-sequencing, and quantitative real-time PCR data
... miR-144-3p expression and clinical characteristics through data collected from Gene Expression Omnibus (GEO) microarrays, the relevant literature, The Cancer Genome Atlas (TCGA), and real-time ...
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Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1
... in gene ranking, which lead to much higher reproducibility among inde- pendent studies ...of gene expression profiles and biomarkers or factors in LTNPs or understand the factors specifically ...
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QTL/microarray approach using pathway information
... compared gene expression pro- files from 99 strains of inbred and recombinant inbred mice in their eQTL ...the gene expression omnibus (GEO) [31] under accession ...each gene, ...
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Identifying differentially expressed genes from cross-site integrated data based on relative expression orderings
... Detecting differentially expressed genes (DEGs) between two phenotypes is a basic task in high-throughput biological studies. It is often hard to detect DEGs under the circumstances where the genes are differentially ...
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Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer
... and gene expression profiles) from the Gene Expression Omnibus ...the gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway (KEGG) enrichment analyses were ...
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CD4 T cell transcriptome analysis reveals aberrant regulation of STAT3 and Wnt signaling pathways in rheumatoid arthritis: evidence from a case–control study
... The gene expression array data were digitalized by using GeneChip Operating Soft- ware (version ...the Gene Expression Omnibus (GEO) of the National Center for Biotechnology Information ...
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DNA methylome profiling of human tissues identifies global and tissue specific methylation patterns
... of gene expression, we compared the detected methylation patterns with publicly available gene expression data (Gene Expression Omnibus (GEO) and ArrayExpress ...with ...
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Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma
... the expression profiles of circRNAs, miRNAs and mRNAs in OS from the Gene Expression Omnibus (GEO) database and the TARGET ...by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and ...
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Tumor infiltrating lymphocytes predict response to anthracycline based chemotherapy in estrogen receptor negative breast cancer
... available gene expression data [19] derived from pre- treatment incisional or core tumor biopsies from a cohort of patients with ER-negative invasive ductal breast ...of gene signatures and treatment ...
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Clinical significance and prospective molecular mechanism of MALAT1 in pancreatic cancer exploration: a comprehensive study based on the GeneChip, GEO, Oncomine, and TCGA databases
... the Gene Expression Omnibus, Oncomine, and The Cancer Genome Atlas databases to determine the clinical diagnostic and prognostic values of ...
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A signature of hypoxia-related factors reveals functional dysregulation and robustly predicts clinical outcomes in stage I/II colorectal cancer patients
... The gene expression profiles of CRC tissue samples obtained from six public cohorts, including 309 CRC patients from the CIT/GSE39582 gene microarray dataset that served as the discovery cohort, were ...
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Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas
... to gene expression classification that might eventually be examined in more detail in future ...the Gene Expression Omnibus data ...
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Gene expression profiles and protein–protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia
... the Gene Expression Omnibus database and the differentially expressed genes (DEGs) between the samples from AIDS patients with and without apparent features of HIVE-induced dementia were ...the ...
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