haplotype sharing
Detecting Local Haplotype Sharing and Haplotype Association
... novel haplotype association method is presented, and its power is ...local haplotype sharing between individuals at each ...local haplotype sharing and phenotypes to test for ...
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Association mapping via a class of haplotype sharing statistics
... the haplotype-sharing statistics considered by each of van der Meulen and te Meerman [2], Bourgain et ..."standard" haplotype sharing tests in the form ...
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Haplotype Sharing Refines the Location of an Imprinted Quantitative Trait Locus With Major Effect on Muscle Mass to a 250-kb Chromosome Segment Containing the Porcine IGF2 Gene
... the haplotype sharing among Q chro- gene stood out as a prime positional candidate (Jeon mosomes, accounting for the distance between adjacent et ...therefore haplotype sharing observed among ...
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Genome wide association analysis of rheumatoid arthritis data via haplotype sharing
... Haplotype sharing is a simple concept that attempts to translate between population genetics and genetic ...of sharing in a region between cases and ...on haplotype sharing that can be ...
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Association testing by haplotype sharing methods applicable to whole genome analysis
... mean haplotype sharing is how to calculate the variance of the mean sharing between all pairs of haplo- ...that haplotype agreement between haplo- type pairs is not ...mean haplotype ...
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The Extent of Linkage Disequilibrium and Haplotype Sharing Around a Polymorphic Site
... particular haplotype (Kaplan et ...of haplotype sharing that are unusu- must also have inherited a short chromosomal region ally extensive given the frequency of the mutation are surrounding the ...
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A novel approach of homozygous haplotype sharing identifies candidate genes in autism spectrum disorder
... Homozygous haplotype sharing in complex disorders There are very few analytical strategies designed to iden- tify rare recessive disease genes for complex ...homozygous haplotype sharing ...
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Population structure and history of the Welsh sheep breeds determined by whole genome genotyping
... 0–10Kb) haplotype sharing with breeds from France, Spain, Portugal and ...fine-scale haplotype sharing also suggested a distant historical relationship between Welsh breeds, including the ...
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A Method for Detecting Recent Selection in the Human Genome From Allele Age Estimates
... of haplotype sharing at the flanking markers within this borg and Tavare´ ...generated haplotype set and compared to the background LD and from gene mapping studies provide estimates of LD that ...
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Evidence for recent gene flow between north-eastern and south-eastern Madagascan poison frogs from a phylogeography of the Mantella cowani group
... The hybridization mentioned in Chiari et al. [23] between M. baroni and M. cowani is confirmed by our study, with a slightly shorter cytochrome b fragment but using more samples. Hybridization is a recognized phenomenon ...
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Comparison of measures for haplotype similarity
... alternative haplotype similarity meas- ures, except YU, are not superior to the simplest measure, defined as the number of intervals flanked by markers ...of haplotype sharing ...
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Estimating population size via line graph reconstruction
... We study the complexity of the resulting line graph modification problems. We observe that both problems (edge- and vertex-deletion) are NP-complete and provide polynomial integer programming formulations to solve them. ...
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A retrospective method for inference on haplotype main effects and haplotype-environment interactions using clustered haplotypes.
... environment independence assumption, but ends up adding complexity to the method. Kwee et al. (2007) developed a simpler retrospective likelihood-based approach that assumes both a rare disease and ...
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Detection of haplotype mutations of the MD-2 gene promoter associated with Der p2-induced allergy using a nanostructured biosensor
... between haplotype mutation and normal genes in the MD-2 gene promoter using a nanostructured ...the haplotype of two single nucleotide polymorphisms in the MD-2 gene promoter region was used as a probe to ...
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Estimating the Strength of Selective Sweeps from Deep Population Diversity Data
... adaptive haplotype, they can generate new variants of the adaptive haplotype that can also rise in frequency (Figure ...sweeping haplotype per ...novel haplotype variant will be the more ...
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Assessing subspecies status of leopards (Panthera pardus) of northern Pakistan using mitochondrial DNA
... first haplotype (A) included 23 samples and was identical to two sequences previously identified as Panthera pardus fusca (accession number: ...second haplotype (B) included 11 samples with identical ...
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Serotonergic System and Attention Deficit Hyperactivity Disorder (ADHD): a potential susceptibility locus at the 5 HT1B receptor gene in 270 Trios from a multi center sample
... disequilibrium. Haplotype based haplotype relative risk analysis performed on the trans- mitted and non transmitted alleles for the marker HTR 1B is presented in Table ...
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Haplotype Diversity in 11 Candidate Genes Across Four Populations
... estimated haplotype frequen- cies across populations will in turn influence the avail- able information about the structure of haplotype blocks and their ...estimated haplotype frequencies, as well ...
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Association Test Algorithm Between a Qualitative Phenotype and a Haplotype or Haplotype Set Using Simultaneous Estimation of Haplotype Frequencies, Diplotype Configurations and Diplotype-Based Penetrances
... Horikawa, Y., N. Oda, N. J. Cox, X. Li, M. Orho-Melander et Urano, W., A. Taniguchi, H. Yamanaka, E. Tanaka, H. Nakajima al., 2000 Genetic variation in the gene encoding calpain-10 is et al., 2002 Polymorphisms in the ...
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Chloroplast diversity of Casearia grandiflora in the Cerrado of Piauí State.
... From the molecular analysis it was possible to estimate the haplotype diversity, which suggested that there are differences in the genetic diversity of C. grandiflora population of the Parque Nacional de Sete ...
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