Local Alignment-Based Searching Using BLAST
A mobile application on performing blast analysis and local alignment
... is BLAST. The next step was to implement the BLAST algorithm in a suitable ...The BLAST algorithm was then incorporated into an application for ...sequence alignment the application needed to ...
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Massively Parallel Sequence Alignment using pcj-blast
... BLAST - Basic Local Alignment Search Tool (1991) • The heuristic algorithm it uses is much faster than other approaches • The search time can be long (days or weeks) for large datasets ...
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Local Alignment Tool Based on Hadoop Framework and GPU Architecture
... All three implementations achieves 4x~40x speedup over a single-thread CPU implementation of NCBI- BLAST. Meanwhile, the software architectures of distribution computing have been developed rapidly as well. The ...
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Fingerprint Alignment Based on Local Feature Combined with Affine Geometric Invariant
... the local minutiae-based matching is the most widely used ...fingerprint alignment that uses the intrinsic geometric properties of triangles constructed from minutia triplet to align minutiae points ...
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Local Path Searching Based Map Matching Algorithm for Floating Car Data
... This proposed algorithm mainly including three steps: local path searching, square confidence region generation, and map matching. For the issues of position fix for the first GPS point in FCD packets, ...
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BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results
... of BLAST hits on the query sequence (Fig 1A), using a represen- tation inspired by the well-known graphical user interface of the NCBI service ...identified using a colour scheme based on the ...
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Web Based Image Searching and Reranking Using Saliencing Techniques
... Shape based features Gabor wavelet A Gabor wavelet is linear filter used for edge detection.. Gabor wavelet is widely adopted to extract texture from the images for retrieval and has been shown to be very ...
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Coordinate Structure Analysis with Global Structural Constraints and Alignment Based Local Features
... Philip Resnik. 1999. Semantic similarity in a tax- onomy. Journal of Artificial Intelligence Research, 11:95–130. Wolfgang Schuette, Thomas Blankenburg, Wolf Guschall, Ina Dittrich, Michael Schroeder, Hans Schweisfurth, ...
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Searching for the lowest metallicity galaxies in the local universe.
... systems with an asterisk. The full sample of observed systems is available online. 3.3. Data Reduction The 2D raw images were individually bias subtracted, flat- field corrected, cleaned for cosmic rays, sky-subtracted, ...
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Enhanced Document Annotation Using Clustering and Alignment Based Algorithms
... text using annotation based ...efficient searching using ...as alignment problem or to divide into composite text nodes when there are no precise barriers between them Here in this ...
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An Efficient Keyword Searching Based On Hierarchical Index By Using Cluster Management
... 1 [email protected] 2 [email protected] Abstract – Abstract In cloud computing the data owners are highly motivated in migrating their local sites to the public commercial cloud. This particular ...
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The Challenge of Technolgy: Alignment Dynamics in Local Governments
... for local governments in Flanders is relatively ...the local governments as a new market for their ...how local governments deal with the IT market. There are local governments that have an ...
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BLAST-based structural annotation of protein residues using Protein Data Bank
... Tables S1, S2 and S3, there is lot of variation in perform- ance of our modules from 0 to 100 % on different PDB chains depending on level of similarity. The number of unique PDB chains in sub-databases used by different ...
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Internal Transcribed Spacer rRNA Gene Based Phylogenetic Reconstruction Using Algorithms with Local and Global Sequence Alignment for Black Yeasts and Their Relatives
... compared using two methods: local and global ...is based on DNA-walk divergence ...algorithm using local alignment for the same data ...groups using genes that otherwise ...
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Alignment And Compression-based Protein Function Prediction Using Secondary Structure
... Usually, alignment scores between amino acid or secondary structure sequences are used to predict protein ...used alignment algorithms is the Smith-Waterman alignment which is a local ...
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MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information
... for alignment quality evaluation Reference-dependent alignment evaluation relies on compari- son of a test alignment to a reference alignment that is assumed to be ...used alignment ...
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An EM Algorithm for Context-Based Searching and Disambiguation with Application to Synonym Term Alignment
... context-based searching model and demonstrate its disambiguation capability, the following sections will use the term alignment problem between simplified Chinese (SC) terms and traditional Chinese ...
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Investigating the Local Granulated Blast Furnace Slag
... of blast furnaces slag in construction industry aims at protecting the environment, fighting against the nuisance such as waste dumps and promoting local ...of local granular slag using ...
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Rapid alignment methods: FASTA and BLAST. p The biological problem p Search strategies p FASTA p BLAST
... Extend seed hits into locally maximal segment pairs n 3.. Calculate p-values and a rank ordering of the local.[r] ...
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Alignment Link Projection Using Transformation Based Learning
... existing alignment systems and correcting ...word-level alignment by examining word features as well as neighboring ...in alignment error rate over that of the best performing ...
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