microarray experiment
Methods for interpreting lists of affected genes obtained in a DNA microarray experiment
... Different analytical methods were applied by the teams of the joint EADGENE and SABRE workshop focusing on the extraction of biological meaning from lists of significantly affected genes. The analyses were in general ...
7
Whole blood gene expression in infants with respiratory syncytial virus bronchiolitis
... the microarray experiment both in the infants selected for microarray and in a new population of 13 more infants admitted to our hospital with the same disease ...
7
Microarray BASICA: Background Adjustment, Segmentation, Image Compression and Analysis of Microarray Images
... a microarray experiment are shown in Figure ...two-channel microarray image acquired through the laser scanner is first sent to the segmentation component, where the target sites are ...
16
Prediction of Drosophila melanogaster gene function using Support Vector Machines
... particular microarray mRNA expression data have been used by numerous researchers as a means to help predict the function of un-annotated ...from microarray experiment data is to use clustering ...
18
BioVLAB Microarray: Microarray Data Analysis in Virtual Environment
... 3) Clustering: Many genes in a microarray experiment may have no known protein functions previously. Also, genes with similar expression patterns may need to be studied as a group. Clustering has been ...
7
Functional genomics annotation of a statistical epistasis network associated with bladder cancer susceptibility
... In this study, we used functional genomics data to validate genetic interaction net- work that was constructed purely based on statistical analysis. We performed an en- richment analysis on a set of genes previously ...
9
ArrayTrack: a free FDA bioinformatics tool to support emerging biomedical research -- an update
... a microarray experiment, including raw gene expression data and information on samples, treatments and phenotypic observations; (ii) LIB, a series of libraries that contain functional information (eg gene ...
7
Within Day Energy Balance and the Relationship to Injury Rates in Pre Professional Ballet Dancers
... In microarray experiments, thousands of hypotheses need to be tested ...DNA microarray experiment, when many hypotheses are tested with each has a specified Type I error probability, the Type I ...
116
Lossless Microarray Image Compression by Hardware Array Compactor
... Abstract: Microarray technology is a new and powerful tool for concurrent monitoring of large number of genes ...Each microarray experiment produces hundreds of ...
8
Survival Analysis of Microarray Data With Microarray Measurement Subject to Measurement Error
... time. Microarray technology allows for the measurement of the expression levels of thousands of genes simultaneously, thereby leading great power to gene ex- pression based research such as those ...the ...
130
Microarray Analysis and Gene Expression : A simplified Review
... DNA microarray experiment and analyze the microarray ...DNA microarray using a machine, mostly a robot to attach small pieces of a gene to a single spot on a glass or silicon slide or any ...
6
UNDERSTANDING THE ACADEMIC USE OF SOCIAL MEDIA: INTEGRATION OF PERSONALITY WITH TAM
... in Microarray technologies, analysis of the tremendous amounts data generated by this technology’s researches remains as a considerable challenge ...in Microarray data analysis is known as the ...
10
Cell surface proteins in S. pneumoniae, S. mitis and S. oralis
... 4000 Microarray Analysis System, Perkin Elmer Life Sciences) with alow resolution of 50 µm using Scan Array Express Software,Version ...each experiment, the fluorescence intensity of the test strain was ...
10
Genome-wide mapping of Hif-1α binding sites in zebrafish
... the microarray data and the genes associated with Hif-1α peaks in their ...the microarray and the genes associated with Hif-1α DNA binding ±1Kb of their TSS, we per- formed hypergeometric ...Our ...
17
EVALUATION OF INTRUSION DETECTION TECHNIQUES IN MOBILE AD HOC NETWORKS
... With the rapid development of computer and information technology, an enormous amount of data in science and engineering had been generated in massive scale. Also, the diversity of data, the data mining tasks and ...
8
Protein chip: An overview
... DNA microarrays to develop the protein chip. In their landmark paper, published in 2000, "Printing Proteins as Microarrays for High-Throughput Function Determination," Gavin Mac Beath and Stuart Schreiber ...
15
Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis
... Gene Expression Omnibus (GEO) database of the NCBI (http://www.ncbi.nlm.nih.gov/geo/) was used to obtain transcriptional data of NCX genes under different devel- opmental stages of rice (Fig. 7). Based on the studies by ...
16
Genome Image Programs
... D URING the past decade research in the field of 2000). To complement the tools available, we have de- molecular biology has gradually shifted from the veloped simple programs for visualizing gene expres- analysis of ...
10
Microarray analysis of genes associated with cell surface NIS protein levels in breast cancer
... In agreement with previous reports [10,11], qRT-PCR detected 7-fold and 12.6-fold increases in NIS mRNA levels with tRA and tRA/H treatment of MCF-7 cells, respectively. Oligonucleotide microarray technology only ...
14
Using gene subsets in the assessment of microarray data quality for time course experiments
... variation for apparatus noise or bias linked to experimental conditions. In fact, these methods are based on assumptions about the behavior of the the majority of the genes. Not too many of the genes are ex- pected to ...
19