multiple protein sequence alignment
Bioinformatics Analysis of the Novel Conserved Micropeptides Encoded by the Plants of Family Brassicaceae
... Sequence alignment of predicted miPEP-156a micropeptides was obtained using complete miPEP- 156a ORF sequences from Brassicaceae retrieved from NCBI DataBank (Table ...conducted multiple alignments ...
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Heuristics for multiobjective multiple sequence alignment
... of sequence alignment provides the practitioner a set of alignments that represents the trade-off between decreasing the number of gaps and increasing ...pairwise sequence (DNA/Protein) ...
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FPGA-based protein sequence alignment : A review
... query sequence with longer length against a database sequence by the used of folded systolic array ...The alignment matrix computation processed sequentially by multiple passes over the same ...
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A Tabu Search Approach to Multiple Sequence Alignment
... BLAST [3] and variations of this algorithm are some of the most commonly used heuristic local alignment programs. These programs compare DNA/ protein sequences to DNA/protein databases in order to ...
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TarO : a target optimisation system for structural biology
... The protein sequence is analysed by 17 algorithms and compared to 8 ...annotated multiple sequence alignment (MSA) that may be edited interactively in the program ...the Protein ...
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Assessing the efficiency of multiple sequence alignment programs
... The efficiency of MSA programs can benchmarked, resulting in useful guidelines. In order to assess and compare the efficiency of the nine programs listed above, the BAliBASE benchmark dataset was selected [16]. BAliBASE ...
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4. Xiangxiang Meng, Weiwei Zhang, Feng Xu, Jiaping Yan, Xiaomeng Liu, Yong-ling Liao and Jie Chang
... 11.5. Protein homology searches were performed by using the bioinformatics software on NCBI website ...(http://www.ncbi.nlm.nih.gov/BLAST/). Multiple sequence alignment was performed with the ...
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19. Jiaping Yan, Xiangxiang Meng, Feng Xu and Jie Chang
... CnPMK protein contained 493 amino ...CnPMK protein were predicted to be 53.8KDa and 5.55, respectively. Multiple sequence alignment of CnPMK amino acid sequences with PMKs from other ...
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F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif
... genomes. Multiple sequence alignment showed that the catalytically important residues of T4 Endo VII were all well conserved in these ...similar protein fold as Endo VII for DNA ...
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Insights of Rv2921c (Ftsy) Gene of Mycobacterium tuberculosis H37Rv To Prove Its Significance by Computational Approach
... hydrolyzing protein ftsY (Rv2921c) has been proved for possessing the same activity in many studies, this gene strongly interacts with ffh gene (Rv2916c) with score of ...ftsY protein is also interacts with ...
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An evaluation of the evolution of the gene structure of dystroglycan
... by multiple sequence alignment of 50 nucleotides span- ning either the exon/intron or intron/exon boundaries of the IG1-intron, using 23 DG gene sequences from representative dystroglycan-encoding ...
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Mutation hot spots in Spike protein of COVID-19
... Multiple sequence Alignment of COVID-19 spike protein sequences from United States of America showed multiple mutations at few frequent locations whereas some of the parts of this ...
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Acetylcholinesterase of the sand fly, Phlebotomus papatasi (Scopoli): cDNA sequence, baculovirus expression, and biochemical properties
... acid protein [GenBank: AFP20868]; 79451 MW, ...acid sequence of PpAChE1 with the AChE protein of ...W multiple sequence alignment is shown in Figure ...partial sequence of ...
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Beta glucosidase from thermotolerant yeast Pichia etchellsii: Gene sequencing, cloning and functional expression in Methylotrophic yeast Pichia pastoris
... The multiple sequence alignment using ClustalV program of DNASTAR showed high degree of homology with members of Genus Kluveromyces, ...aa protein and 73.4 % with K. fragilis β- glucosidase ...
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Prenominal Modifier Ordering via Multiple Sequence Alignment
... from multiple sequence alignment (MSA) techniques used in computational ...and protein sequences, aligning three or more biological sequences in or- der to determine, for example, common ...
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Comparative In silico Study of Sex-Determining Region Y (SRY) Protein Sequences Involved in Sex-Determining
... The multiple sequence alignment results indicated that SRY protein sequences from Orcinus orca (killer whale) and Tursiopsaduncus (dolphin) have least genetic distance of ...
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Cluster Analysis Method for Multiple Sequence Alignment
... a sequence alignment is a method of arranging the primary sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary ...
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The α/β fold uracil DNA glycosylases: a common origin with diverse fates
... Using sequence profile searches, multiple alignment analysis and protein structure comparisons, we show here that all known UDGs possess the same fold and must have evolved from a common ...
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In search of novel folds : protein evolution via non homologous recombination : a dissertation presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biochemistry at Massey University, Albany, New Zealand
... AIV.2 DNA and protein sequence of Kvβ2 and trPRAI 211 AIV.3 Multiple sequence alignment of all chimeras 213 AIV.4 Secondary structure elements in trPRAI; PDB–2KZH 214 AIV.5 Secondary ...
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Parmacogenomics based drug design for asthma
... of protein three- dimensional structures. The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all ...
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