Phylogenetic and genetic analyses
Integrating Phylogenetic and Population Genetic Analyses of Multiple Loci to Test Species Divergence Hypotheses in Passerina Buntings
... population genetic analyses of DNA sequence data from 10 nuclear loci were used to test species divergence hypotheses within Passerina buntings, with special focus on a strongly supported, but ...
15
Complete genome of a European hepatitis C virus subtype 1g isolate: phylogenetic and genetic analyses
... mean genetic distances between genotype 1 subtypes based on 26 representative sequences of subtypes 1a, 1b, 1c, an unassigned subtype 1 and our subtype 1g sequence were calculated (Table ...mean genetic ...
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Genetic and Phylogenetic Analyses of Influenza A H1N1pdm Virus in Buenos Aires, Argentina
... and phylogenetic and genetic analyses of 21 complete genome sequences from both mild and fatal cases were achieved with reference to concatenated whole ...
9
Fundamentals of Fungal Molecular Population Genetic Analyses
... The second phylogenetic test uses gene sequences from several genes. Clonality can be distinguished from recombination by comparing phylogenetic trees built for different genes. If the trees are congruent, ...
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Genetic Analyses of Visual Pigments of the Pigeon (Columba livia)
... spectral analyses, with corresponding p I, aa values for LWS opsins are given by the exception of p Cl , we used cDNAs that encode identi- ...the phylogenetic rela- deduced from genomic ...be- ...
12
Phylogenetic analyses within three sections of the genus Vicia
... Interspecific genetic similarity/diversity for Vicia ...interspecies genetic similarity calculated in particular RAPD analyses for 8 Vicia ...interspecies genetic diversity in particular RAPD ...
22
Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians
... Therefore, knowledge about spalt and its expression derives from studies in a few model organisms represent- ing the three major clades of bilaterians: Ecdysozoa D. melanogaster Salm and Salr and C. elegans SEM-4; Spi- ...
13
Evolutionary History of Cucumber Mosaic Virus Deduced by Phylogenetic Analyses
... The trees estimated for open reading frames (ORFs) located on the different RNAs were not congruent and did not completely support the subgrouping indicated by the CP ORF, indicating that different RNAs had independent ...
6
ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
... and phylogenetic analysis unreliable across evolutionarily distant fungi because the sequences are hard to align ...two genetic markers into a single phylogenetic tree that can be used for diversity ...
10
Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards
... Bayesian analyses of ...phylo- genetic relationships among 30 scincid lizard ...Bayesian analyses exist in the literature, resulting in a lack of methods to determine the appropriate number of and ...
18
Nucleotide and phylogenetic analyses of the Chlamydia trachomatis ompA gene indicates it is a hotspot for mutation
... differing phylogenetic histories com- pared to other regions of the ...phylo- genetic congruence in the regions flanking ompA are characteristic motifs of gene ...
8
SINE Insertions in Cladistic Analyses and the Phylogenetic Affiliations of Tarsius bancanus to Other Primates
... To verify the species specificity of the sequences deter- mined, we reconstructed a ML tree based on the concat- enated Alu flanking exon and intron sequence of all three markers. From the two representatives of the ...
8
Molecular and phylogenetic analyses of a new Amphotropic murine leukemia virus (MuLV 1313)
... complete genetic structure of any amphotropic MuLV strain is not available and the evolutionary relationships of these retroviruses to a broad range of both endogenous and exogenous MuLV strains have yet to be ...
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Phylogenetic analyses of peanut resistance gene candidates and screening of different genotypes for polymorphic markers
... NBS-encoding RGC have been cloned from several plant species and colocalized with many known resistance genes loci, including those for qualitative and quantitative resistance (Wei et al., 2002; Wang et al., 2001; ...
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Use of Phylogenetic and Phenotypic Analyses To Identify Nonhemolytic Streptococci Isolated from Bacteremic Patients
... their phylogenetic diversification within distinct ...for genetic transformation (24), and there is direct evidence of interspecies homologous recombination in genes encoding transpeptidases ...
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Phylogenetic Analyses and Biogeography of Trilliaceae
... In addition, there is only one globally widespread species, Paris quadrifolia (which is found from Ireland to Mongolia and Siberia); there are two widespread gene[r] ...
15
Phylogenetic analyses and taxonomy of Anthelidae (Lepidoptera)
... a phylogenetic system that, if used correctly, can provide a justifiable basis for the interpretation and generalisation o f observations made on a few taxa ...
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Novel molecular markers for the detection of methanogens and phylogenetic analyses of methanogenic communities.
... large phylogenetic and phenotypic diversity of this group of organisms, which inhabit various anoxic environments including peatlands, freshwater sediments, landfills, anaerobic digesters and the intestinal tracts ...
12
Diversity and Molecular Phylogenetic Analyses of Parmelioid Lichens (Parmeliaceae, Ascomycota) In Kenya
... the phylogenetic relationships and to re-asses traditional phenotype-based taxon delimitation in Bulborrhizina, Bulbothrix, Canoparmelia, Hypotrachyna, Parmelinella, Relicina and ...infer phylogenetic ...
150
Base Compositional Bias and Phylogenetic Analyses: A Test of the Flying DNA Hypothesis
... of phylogenetic analyses (Loomis and Smith, 1990; Saccone et ...the phylogenetic results as suggested by Pettigrew (1994), then most previous phylogenetic analyses of DNA sequences ...
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