Protein Data Bank
Cosurim: A program for automated computation of composition of core, rim and surface of protein data bank files and its applications
... A detailed flow-chart of the functioning of the program, Cosurim, is presented in Fig. 1. Upon start of the program, it looks for Protein Data Bank (PDB) files in the present directory. If PDB(s) are ...
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hPDB – Haskell library for processing atomic biomolecular structures in protein data bank format
... The Protein Data Bank (PDB) is a widely used data repository of atomic resolution, three-dimensional pro- tein and nucleic acid structures ...structural data enables key endeavors to ...
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IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank
... Published paper Nadzirin, N, Willett, P, Artymiuk, PJ and Firdaus-Raih, M 2013 IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data[r] ...
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Analysis of crystallization data the Protein Data Bank
... the protein solution further (potentially allowing the protein concentration to be increased) or decrease the protein solubility causing precipitation: the so-called ‘salting-in’ and ...the ...
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Visualising the Experimentally Uncharted Territories of Membrane Protein Structures inside Protein Data Bank
... membrane protein (MP) structures, which constitute more than half of current drug ...experimental data-driven hybrid approach, and calls for continued development of MP structural determination with less ...
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BLAST-based structural annotation of protein residues using Protein Data Bank
... Results: A web-server StarPDB has been developed for structural annotation of a protein based on its similarity with known protein structures. It uses standard BLAST software for performing similarity ...
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ABSTRACT: The enzymes that exhibit a domain movement, the conformational change induced by the binding of a
... of protein domain movements are those found by applying the DynDom program to pairs of crystallographic structures contained in Protein Data Bank ...their Protein Data ...
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IN SILICO STUDY ON ANTINEOPLASTIC ACTIVITY OF MODIFIED PLANT BASED CHEMICAL INHIBITORS OF ANTI APOPTOTIC PROTEINS
... Bcl-2 protein (2O2F) were used in the study of these structure of tubulin β-1chain is not known and that of Bcl-2 taken from protein data bank with ID ...Bcl-2 protein was taken to ...
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Purification and properties of a novel quizalofop-p-ethyl-hydrolyzing esterase involved in quizalofop-p-ethyl degradation by Pseudomonas sp. J-2
... putative signal peptide was identified at the N termi- nus by using the SignalP 4.1 server, with the most likely cleavage site situated between amino acids Ala33 and Gly34, resulting in a putative 276-residue mature pro- ...
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Synthesis and Molecular docking studies of Indole based compound (2 Methyl 1 Phenylsulfonyl 1h Indol 3 yl)Phenylmethyl Acetate to nicotinic acetylcholine receptors
... Binding Protein (AChBP) (PDB ID: 2XNU) was obtained from the RSCB Protein Data Bank (RSCB ...binding protein (AChBP) as template for hierarchical in silico screening procedures to ...
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Structural and biochemical characterisation of utrophin and dystrophin spectrin repeat domains : submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Biochemistry, Massey University, Palmerston North, NZ
... the Protein Data Bank from α-actinin, spectrin and plectin these are the first structures determined for any of the spectrin repeats from utrophin and ...
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Download Download PDF
... the Protein Data Bank with PDB code: 1A52 which was the result of crystallization form of proteins with the estradiol ligand crystal with a value of ...receptor protein was a homodimer ...
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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
... the Protein Data Bank (PDB) ...full-length protein in the correct quaternary structure, but often only specific ...interior, protein–protein interaction inter- faces, and other ...
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Conserved Glycine 33 Residue in Flexible Domain I of Hepatitis C Virus Core Protein Is Critical for Virus Infectivity
... core protein forms the viral nucleocapsid and plays a critical role in the formation of infectious ...core protein, is important for the production of cell culture-infectious virus ...core protein ...
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Mapping of anti inflammatory phytochemicals on cancer drug target network using systems biology approach
... a protein- ligand interaction network where ligands and proteins are anti- phytochemicals and cancer inducing drug targets ...target protein in the protein-ligand network and an appropriate ...
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IN SILICO DISCOVERY AND MOLECULAR DOCKING EVALUATION OF NOVEL 3-(TRI FLUORO METHYL) - 5,6,7,8- TETRA HYDRO �[1,2,4]-TRIAZOLO (4,3-Α)- PYRAZINE (SITAGLIPTIN INTERMIDIATE DERIVATES) INHIBITORS ON E-COLI DNA GYRASE-AV. Nagalakshmamma, P. V. Chalapathi, M. Venkataswamy, B. Suman,K. Thyaga Raju, and C. Nagaraju*DOWNLOAD/VIEW
... The 3D X-ray crystal structure of target protein E coli DNA Gyr-A was retrieved from Brook Heaven Protein Data Bank (PDB database) (http://www.rcsb.org/pdb) (PDBID: 1AB4) at 1.60 Ǻ RMSD ...
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Predicting and Repurposing of Drug and Drug Like Compounds for Inhibition of the Covid-19 and Its Cytokine Storm by Computational Methods
... High-resolution X-ray diffraction SARS CoV-2 of macrodomain binding ADP ribose phosphate and human TRPM2 protein structures were downloaded from protein data bank (https://www.rcsb.org/pdb). ...
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The CATH database
... solved protein structures is increas- ing at an exceptional ...the Protein Data Bank 1,2 (PDB) contains more than 61,000 ...of protein domains (sub-sequences of proteins that may fold, ...
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A Brief Overview of a Few Popular and Important Protein Databases
... of data derived experimentally such as sequences and structures of biological ...contains data derived from the analyses and annotations of the data present in primary databases ...of data ...
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Structure Guided Design and Biophysical Characterization of Novel Anti HIV Reagents
... the Protein Data Bank (PDB) to find structures that were relatively elongated and rigid, or represented small globular proteins, with the idea of joining these in various combinations with short ...
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