Protein identification and prediction
Carbohydrate-binding protein identification by coupling structural similarity searching with binding affinity prediction
... Carbohydrates are associated with many biological processes and perform essential roles at the cellular level in living organisms. These roles are typically through engagement with proteins by both non-covalent ...
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RETRACTED: Prediction and Identification of B-Cell Epitopes on Goose Parvovirus Capsid Protein
... VP1 protein were predicted by ...capsid protein of GPV strain H1 using viral infected sera. Identification of antigenic epitopes of the capsid protein may provide the basis for the development ...
5
Computational prediction of protein protein complexes
... and identification of the most probable complex among thousands of complexes thus generated is ...interacting protein molecules. Findings: A plausible protein-protein hetero-complex was fished ...
6
Topology Prediction and Motifs Identification of Bicyclomycin Resistance Protein of Ehrlichia Canis Strain Bangkok
... Bcr protein was analysed and revealed close relationship with those of drug resistance transporter Bcr/CflA subfamily from bacteria in order ...Topology prediction using hidden Markov model algorithms ...
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A New Algorithm for Protein-Protein Interaction Prediction
... A lot of research remains to be done. Our results are good but we hope to improve them. First, at the very beginning of the ROC curve, PIPI2 is better and we hope to improve that part. Better identification of ...
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Machine learning for the prediction of protein-protein interactions
... the prediction of PPI ...interacting protein pairs predicted while minimizing the number of false-positive predicted ...the identification and validation of new PPI, because they can focus on the ...
202
Reciprocal Perspective for Improved Protein-Protein Interaction Prediction
... the identification of hub proteins, resulting PPI models risk having an over-representation of these windows and an under-representation of their highly specific ...given protein A, produce a large number ...
12
Algorithmic approaches to protein-protein interaction site prediction
... on protein surfaces mediate virtually all biological activities, and their identification holds promise for disease treatment and drug ...the prediction of these sites have been produced at a rapid ...
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Whole proteome identification of plant candidate G protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in vivo protein coupling
... Notably, this extension to wet bench analysis was not per- formed in the previous plant GPCR prediction attempts, and is rarely, if at all, performed in bioinformatic studies predict- ing novel GPCRs in metazoans. ...
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Assessing the Performances of Protein Function Prediction Algorithms from the Perspectives of Identification Accuracy and False Discovery Rate
... on protein sequence similarity, and machine learning predicts functional families from protein sequences irrespective of their similarity, which complements BLAST and other methods in predicting diverse ...
22
Improving the prediction of yeast protein function using weighted protein-protein interactions
... confidence for the others (one method identification). Table 3 presents the yeast pro- tein interactions, the number of experimental methods used to identify them and the identification value for each one. ...
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Protein structure prediction and structure-based protein function annotation
... predicted protein models relies on the accuracy of the structure prediction 40 ...the protein structure is ...meaningful prediction, ...including protein domain boundary ...
141
Human protein-protein interaction prediction
... Figure 7.4 shows the average Quality Score for a protein against the actual accuracy of the secondary structure prediction measured using the Q3 score, where the Q3 score is the proporti[r] ...
276
Analysis and prediction of protein-protein interactions
... OF PROTEIN PROFILE ALIGNMENTS The aim was to find proteins that form interactions with a particular ...first protein known to interact and for which the profile was derived (and all other sequences aligned ...
296
Protein Structure Prediction
... 4.2 Multiple Alignment In order to determine which residues belong to conserved protein cores, we will have to com- pute a multiple alignment of the sequences selected in the previous stage. This will be done ...
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Protein Domains Prediction
... Zbývající část práce věnuji implementovanému postupu predikce proteinových domén, který využívá informace obsažené v profilu multisekvenčního zarovnání metody PSI-BLAST,[r] ...
85
A bayesian kernel for the prediction of protein-protein interactions
... a protein in order to understand its ...predict protein-protein ...predict protein-protein ...experimental protein-protein interactions data that were compiled from ...
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Residue conservation in the prediction of protein-protein interfaces
... or prediction had been ...a protein-protein interaction plays an im portant functional role, it is interesting to study how patterns o f evolutionary conservation in the protom er sequences relate to ...
118
NOXclass: prediction of protein-protein interaction types
... identifying protein-protein interaction ...in protein interaction sites based on hydrophobicity ...the protein surface ...predict protein-protein binding sites ...Transient ...
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Protein-protein interface: database, analysis and prediction
... Introduction Protein-protein interactions play a pivotal role in cellular processes such as DNA replication and transcription, RNA splicing, signal transduction and metabolic ...of ...
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