Regulatory elements and motifs
Ultraconserved Elements: Analyses of Dosage Sensitivity, Motifs and Boundaries
... asked whether there may be structural features that distinguish them as discrete entities, distinct from flank- ing chromosomal regions (e.g., see G ardiner et al. 2006). For example, because any chromosomal region in an ...
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Genome wide identification of regulatory motifs in Bacillus subtilis
... of regulatory elements recognized by different transcription ...infrequent motifs are ...known regulatory ele- ments are rarely observed to be separated by more ...
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Exploring transcription patterns and regulatory motifs in Arabidopsis thaliana
... identify regulatory elements, such as transcription factor binding ...in regulatory elements that are essential for the initiation of ...such elements is especially important, as simply ...
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An Overview of Transcription Regulatory Elements in Plant
... CA elements (Yamamoto et ...like motifs tend to be together that reveals its co- evolutionary ...GA elements are plant specific (Yamamoto et al. 2009). Evening elements AAAATATCT, a DNA ...
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Evolution of candidate transcriptional regulatory motifs since the human chimpanzee divergence
... and regulatory sequences, we would argue that generalized concepts explaining the parallel evolution of cod- ing sequences and regulatory elements may not be applicable in a genome-wide ...gene ...
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Functional Identification and Characterization of cis-Regulatory Elements
... binding motifs (Stormo and Fields 1998), to predict ...sequence motifs in the promoters of yeast genes can be effective in predicting relative expression across conditions and learning sequence ...
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Systems-wide Identification of cis-Regulatory Elements in Proteins
... linear motifs (SLiMs). SLiMs are short sequence stretches with conserved motifs, typically 3–12 residues long, that can mediate protein-protein interactions (Mooney et ...
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Identification and functional characterization of microRNA regulatory elements in Brassicaceae
... the regulatory regions of microRNA ...conserved motifs plus an extra iron-deficient responsive element (IDE) in miRNA390a promoter region among 9 species, and five conserved motifs in miRNA390b ...
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Computational discovery of regulatory elements in a continuous expression space
... of regulatory ele- ments require clustering of the expression ...vering regulatory elements that does not require clustering and allows overlaps between different gene ...validated motifs they ...
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Analysis on Microarray Data and DNA Regulatory Elements Prediction
... potential regulatory elements in a group of functionally related ...DNA motifs were conducted in yeast, since the yeast promoter region is relatively well defined and close to the coding ...
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Genome wide identification of regulatory elements in Sertoli cells
... matching motifs that were more predictive of inactive DHSs compared with active ...identify motifs associated with known pregranulosa cell-specific TFs, the H3K27ac-negative DHSs likely represent a ...
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Identification of Long-Range Regulatory Elements in the Human Genome
... binding motifs corresponding to enhancer–promoter interactions as described in Chapter ...of regulatory information that can help shed light on long-range ...
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Motifs and cis regulatory modules mediating the expression of genes co expressed in presynaptic neurons
... cis-regulatory elements in Rab3A locus by two strategies In vivo transgenic experiments identified a ...cis-regulatory elements responsible for neuronal expression of Rab3A at ...characterize ...
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Evolution of New cis-Regulatory Motifs Required for Cell-Specific Gene Expression in Caenorhabditis
... three elements in ...Thus, regulatory evolution occurring in cis within a 58 bp lin-3 fragment, results in a strict requirement for the NHR binding site and a second E-box in ...cis-regulatory ...
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A novel approach to identifying regulatory motifs in distantly related genomes
... enhancer elements present in several viral promoters and in a number of cellular promoters such as those of the class I MHC, interleukin-2 receptor, and interferon-beta ...
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Analysis of Cis-acting Regulatory Motifs Involved in Alternative Splicing
... splicing elements are unknown, therefore, only splicing enhancer or silencer will be ...those elements that are highly repetitive yet with undefined length, we use (XXX)n where XXX is the core ...validated ...
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Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation
... Polyproline motifs induce ribosome stalling during translation, but the functional signifi- cance of this effect remains ...polyproline motifs reveals that they are disfavored in ...polyproline ...
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A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs
... sequence elements between −12 to −1 relative to the transcription start site, has been implicated as essential to the activity of the 16S/23S rRNA promoter of the archaeon Sulfolobus shibatae ...between ...
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An evolutionary and functional assessment of regulatory network motifs
... transcriptional regulatory networks are compared to rand- omized versions thereof, some special subgraphs, dubbed motifs, have been shown to be statistically over-represented ...
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Elements of a Regulatory Framework
... Provide details of its procedures on its website Publish disciplinary findings/ regulatory decisions Provide annual reports of regulatory activity to. Insolvency Service, which con[r] ...
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