sequence database
Processor and data scheduling for online parallel sequence database servers
... growing database size as a result of the growing speed of sequence discovery, however, has made the search job increasingly ...data-intensive, sequence search tasks are becoming over- whelming for a ...
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RIDOM: Comprehensive and public sequence database for identification of Mycobacteriumspecies
... organism sequence is present in the database ...high-quality database is an excellent tool for spe- cies identification of mycobacteria, which reduces turn- around time and makes repeat analysis and ...
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The impact of sequence database choice on metaproteomic results in gut microbiota studies
... represent sequence DBs based on metagenomic reads processed by FragGeneScan or six-frame translation, respectively, while CF and C6 (in red) represent sequence DBs based on metagenomic assembled contigs ...
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Cognitive Analysis In Web Log Using Comparative Study Of Apriori And Eclat Algorithm
... the sequence pattern mining extract the sequence database looking for repeating patterns (known as frequent sequences) that can be used later by end users to find associations between the different ...
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Mining of Sequential Patterns using Directed Graphs
... sequential database and discovers sequential ...sequential database, which consists of a directed graph DGS (cycles and several edges are allowed) and an organization of directed paths in DGS to represent a ...
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HIV-1 Epitope Variability Is Associated with T Cell Receptor Repertoire Instability and Breadth
... Epitope sequence diversity in the Los Alamos HIV Sequence Database is an indirect approximation of the mutational space available for epitope variation in a given person, which may be context ...
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High quality genome sequence and description of Enterobacter mori strain 5–4, isolated from a mixture of formation water and crude-oil
... COG database [38,39] using NCBI blastp (hits should have scores no less than 60, e value is no more than ...nucleotide sequence database database (nt database was downloaded at Sep 20, ...
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Identification of Protein Isoforms in Mass Spectrometry Based Proteomic Analyses Using Alternative Splicing Databases.
... data. Database searching algorithms are the most frequently used methods for large-scale proteomics ...MS/MS database searching methods is similar. 3 Given a protein sequence database, the ...
102
Tools and resources for identifying protein families, domains and motifs
... PRINTS-S database [11,12] uses fingerprints as diag- nostic signatures, in a variation on the methods described ...whole sequence is taken into ...multiple sequence align- ...the sequence, ...
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In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos
... protein sequence database and by accepting only protein identifications with two sequence-unique peptides occurring in at least two of three experimental data sets, 158 proteins were identified ...
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The human olfactory receptor repertoire
... multiple sequence alignment (Figure 2) are those extracted from genomic sequence database ...independent database mining and genomic cloning effort allowed us to verify the hOR selection ...
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Neisseria Adhesin A Variation and Revised Nomenclature Scheme
... and sequence (⬎90% homol- ...the sequence diversity but rather by the antigen expression level (10, ...acid sequence), including a different stop codon (TGA instead of ...coding sequence of ...
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A novel genetic approach for optimized biological sequence alignment
... in sequence alignment problem for having optimal align- ment by maximizing the similarities between the residues that compose ...RNA sequence alignment technique based on multi-objective genetic algorithm ...
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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
... Genes were identified using Prodigal [33] as part of the Oak Ridge National Laboratory genome an- notation pipeline, followed by a round of manual curation using the JGI GenePRIMP pipeline [34]. The predicted CDSs were ...
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Parallel Two Master Method to Improve BLAST Algorithm’s Performance
... large database sequence also ...time, Database Segmentation Technique is a better technique than Query Segmentation ...In Database Segmentation Technique, Query Sequence is loaded to ...
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In-silico Homology Modeling of MMP25 involved in Asthma
... chemical fumes and strong odors, cold air or dry, wet or windy weather, low air quality due to traffic pollution or high ozone levels and exposure to volatile organic compounds. Asthma cannot be cured, but its symptoms ...
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Identification and Characterization of Three Immunodominant Structural Proteins of Fowlpox Virus
... protein sequence after the RGDLGSL motif, so that it aligned with the same sequence in the MC133L protein (note that the RGD triplet immediately precedes the sequences ...same sequence as Tian Tan ...
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The Aldehyde Dehydrogenase Gene Superfamily Resource Center
... accession’s sequence relative to the latest genomic assembly for its respective ...www.aldh.org database are co-aligned to their genomic ...FASTA sequence summaries and any sequence ...
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FISH IDENTIFICATION USING SEQUENCE ANALYSIS OF THE AMPLIFIED COI GENE
... gene sequence for species identification is becoming popular since last few ...gene sequence to identify a locally collected freshwater fish from ...
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A Crowdsourced Database of Event Sequence Descriptions for the Acquisition of High quality Script Knowledge
... two scenarios are among those with the highest complexity and variability in how the script could be carried out. The overall average Dice is 0.41, that is, the agreement is quite good on corresponding core events, ...
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