Sequencing and phylogenetics
A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses
... DNA sequencing by the Sanger method can only be performed on a single pure ...direct sequencing will give double peaks at sites that dif- fer within and between homeologues, and the phase of many such ...
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Lab 2/Phylogenetics/September 16, PHYLOGENETICS
... DNA sequencing provides a very powerful tool for making these species to species ...DNA sequencing determines the precise sequence of the nucleotides for genes for a very precise comparison of their ...
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Molecular Phylogenetics and Evolution
... Products were then sequenced in both directions at the University of California Riverside’s Core Genetics Institute, which uses an automated DNA sequencer (ABI 3730xl). Sequencing primers were designed as ...
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Biogeography and phylogenetics of the planktonic foraminifera
... ~3,000 bp of the SSU rRNA gene, various phylogenetic hypotheses were tested to assess the rigidity of the optimal phylogenies, and an examination of the relative rates of evolution between the foraminiferal taxa made. In ...
396
Molecular Phylogenetics of Candida albicans
... ing; (ii) that the clades differed significantly in the proportions of isolates typed as A, B, or C on the basis of an ITS1 intron (42, 43); (iii) that the clades differed significantly in the pro- portions of isolates ...
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Section 3 Comparative Genomics and Phylogenetics
... DNA sequencing, a technique by which the exact order of nucleotides within a DNA molecule can be ...the sequencing result that you get back may look something like ...
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Spatial phylogenetics of the native California flora
... New sequences were generated for the OTUs that were not represented by a sequence in GenBank. Three DNA regions (nrDNA: ITS; cpDNA: rbc L mat K) were sequenced for this study; sequences were recovered for 342 OTUs, and ...
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Maternal Phylogenetics of Some Anatolian Cattle Breeds
... and sequencing reaction was applied according to Beckman Coulter DTCS kit’s manufacturer’s ...and sequencing were determined by sequence analysis using CEQ-8000 Lrf-b program with 25 second ...
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Analysis of gene copy number changes in tumor phylogenetics
... cell sequencing (SCS) technique also has the potential to count the number of specific genes or spe- cific regions for a group of cells, the highly non-uniform coverage, the admixture signal and relatively high ...
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Molecular phylogenetics and genotypic variation in Coleoptera - a bioinformatics approach
... next-generation sequencing of, for example, mitochondrial genetic diversity of taxonomically poorly characterised communities of organisms in previously unsampled but ecologically and evolutionary significant ...
227
Molecular Phylogenetics and Evolution 26 (2003) 36 45
... Cloning of cytochrome b for the four oak gallwasp species that failed direct sequencing revealed multiple cytochrome b-like sequences. Only one sequence from each species was found to be of the correct length and ...
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Phylogenetics of Lilliales
... In recent classifications (Chase et a!. 2000; Angiosperm Phylogeny Group II [APG II 2003]), the order Liliales con- sists of nine families: Alstroemeriaceae, Campynemata[r] ...
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Efficiency of Algorithms in Phylogenetics
... A BSTRACT Phylogenetics is the study of evolutionary relationships between species. Phylogenetic trees have long been the standard object used in evolutionary biology to illustrate how a given set of species are ...
119
Entanglement, invariants, and phylogenetics
... Zealand phylogenetics meeting; Rex Lau, Lars Jermiin, Michael Charleston and SUBIT; Alexei Drummond; Simon Wotherspoon (for giving me such a hard time), Malgorzata O’Reilly, Jim Bashford, Giuseppe Cimo, Stuart ...
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Entanglement, invariants, and phylogenetics
... because phylogenetics is a relatively new mathematical problem (for example see the classic paper by Felsenstein [19]) whereas the mathematics of particle physics has been studied for over a ...
105
Molecular Phylogenetics and Evolution
... Outgroup 1.00 Acanthisitta chloris 0.99 1.00 1.00 Philepitta castanea Pitta erythrogaster 1.00 Furnarius cristatus Tyrannus savana 1.00 Menura novaehollandiae 1.00 1.00 1.00 Ptilonorhync[r] ...
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Molecular Phylogenetics and Evolution
... Although the extreme polyphyly of Phrygilus precludes our ana- lyzing the history of diversification of the genus, the analysis of each plumage group separately still provides useful insi[r] ...
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Molecular Phylogenetics and Evolution
... In this study, we mainly focus on two morphologically unique colubroid genera, Scaphiodontophis and Sibynophis as well as multiple species representing all families in Colubroidea and su[r] ...
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Molecular Phylogenetics and the Diversification of Hummingbirds
... The timing of this increase, which corresponds closely with Panamanian uplift, reflects not only in situ diversification of Mountain Gems and Bees, but also multiple independent invasion[r] ...
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Morphological phylogenetics of Bignoniaceae Juss.
... The present study revealed that the two studied species of Tabebuia showed a strong support for monophyly as well as Tecoma and Kigelia.. It was revealed that Bignonia, Markhamia and Par[r] ...
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