structural variation
Structural variation in generated health reports
... iwp all 20050906 pdf Structural variation in generated health reports Catalina Hallett and Donia Scott Centre for Research in Computing The Open University Walton Hall Milton Keynes MK7 6AA {c hallett[.] ...
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FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods
... present Structural Variation Engine ( SVE ), a computa- tional infrastructure that currently includes an ensemble of eight popular SV calling methods and a novel algor- ithm—FusorSV to merge the SV calls ...
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Structural variation of the Bonin ridge revealed by modeling of seismic and gravity data
... the structural variation toward the trench shown by our study: either subduction of the buoyant crust beneath a forearc oceanic crust, or mantle wedge serpentinization ...
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Structural Variation in Turkish Complex Predicates
... Öztürk (2003) makes a case that preverbal bare nouns composing with etmek are of the category NP, and that they are of the same type as preverbal bare noun ‘objects’ with heavy verbs, which both she and Aydemir (2004) ...
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Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays
... gle-nucleotide variation and small indels in the individuals sequenced, but larger structural variants and repetitive regions in the genome are more difficult to ...As structural variation can ...
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Along trench structural variation and seismic coupling in the northern Japan subduction zone
... along-trench structural variations in this ...along-trench structural variation in the shallower portion of the overlying plate (Hayakawa et ...
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SQUID: transcriptomic structural variation detection from RNA seq
... genomic structural variation ...pieces, structural variants can potentially cause severe alteration to transcribed or translated prod- ...transcriptomic structural variants (TSVs), can have a ...
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Evaluating nanopore sequencing data processing pipelines for structural variation identification
... The CHM1 genome assembly was downloaded from NCBI (ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000 /306/695/GCA_000306695.2_CHM1_1.1/GCA_0003066 95.2_CHM1_1.1_genomic.fna.gz). The nanopore se- quence reads were simulated ...
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Evidence of novel fine-scale structural variation at autism spectrum disorder candidate loci
... number variation in ASD have relied heavily on array technologies that were originally designed for the purpose of conducting SNP-based gen- ome-wide association studies ...detect variation below 10 kb. As ...
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Global impact of somatic structural variation on the DNA methylome of human cancers
... overall structural variation burden across cancers, which were distinct from that of the overall mutational ...Overall structural vari- ation burden ...increasing structural variation ...
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SV-STAT accurately detects structural variation via alignment to reference-based assemblies
... ‘ Structural Variation detection by STAck and Tail ’ (SV-STAT) which implements a novel scoring ...for structural variation in genomic regions suspected of harboring ...five structural ...
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Defining the diverse spectrum of inversions, complex structural variation, and chromothripsis in the morbid human genome
... Structural variation (SV), or the rearrangement of chromosomal segments (≥50 bp), is a major driver of the organization and content of individual genomes ...
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Development of an oligosaccharide library to characterise the structural variation in glucuronoarabinoxylan in the cell walls of vegetative tissues in grasses
... microarrays, which are probed with monoclonal antibod- ies (mAbs) or carbohydrate-binding molecules (CBMs) with specificities for cell wall components. Although Microarray-based glycan profiling is a powerful tech- nique ...
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Sequence and structural variation in the genome of the Biomphalaria glabrata embryonic (Bge) cell line
... reveals variation in important gene classes To probe the genomic differences between Bge3 and the reference ...and structural variants are difficult to confidently call with short-read data [25], we removed ...
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Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing
... We further evaluated SV detection algorithm using an- other WGS real data of a Han Chinese individual HG00514 (Additional file 1: Table S3), which is one of the data used in the Human Genome Structural Vari- ation ...
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Modeling double strand break susceptibility to interrogate structural variation in cancer
... genes and gene-poor heterochromatin respectively) emerge as informative features, with H3K36m3 enriched in high DSB regions and H3K9me3 in low DSB regions (Fig. 3c). This is consistent with observations that struc- tural ...
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Structural Variation and Local Service Delivery: Comparing Municipal Governments and Special Purpose Bodies
... Five of these eight services were delivered by special purpose bodies during the study period. These were: economic development, public health, public transit, tourism promotion, and water production, treatment, and ...
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Quorum sensing interference and structural variation of quorum sensing mimics in Australian soft coral
... with structural similarities to the well-studied bacterial QS molecules acyl homoserine ...with structural variability of the secondary oxygen ring; cembranoid diterpenes with a furan ring or five-membered ...
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Structural variation in cation assisted assembly of high nuclearity Mn arsonate and phosphonate wheels
... exclusively coordinated to phosphonate O donor atoms. It is noteworthy that with the exception of two phosphonate ligands, all the O-donor atoms of the remaining 18 phos- phonate ligands are involved in bonding to Mn or ...
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Structural variation discovery in the cancer genome using next generation sequencing: Computational solutions and perspectives
... Somatic Structural Variations (SVs) are a complex collection of chromosomal mutations that could directly contribute to carcinogenesis. Next Generation Sequencing (NGS) technology has emerged as the primary means ...
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