Transcriptomic and proteomic analysis
Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick borne encephalitis virus: transcriptomic and proteomic analysis
... for transcriptomic and proteomic analysis Six replicate tubes per time-point per cell line were ei- ther infected with TBEV at MOI 5 or ...both transcriptomic and proteomic analyses ...
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Genomic, transcriptomic and proteomic analysis of Pleurotus ostreatus secreted proteins
... secretome analysis continues, involving the identification, isolation and protein sequencing of spots corresponding to single ...MS analysis of the samples (Rabilloud, Carpentier, & Tarroux, ...2D-PAGE ...
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Integrated transcriptomic and proteomic analysis of the global response of Wolbachia to doxycycline-induced stress
... integrated transcriptomic and proteomic study has revealed that a 70-year-old drug with a well-defined target displays a plethora of effects on gene expression, even in a bacterium with a highly reduced ...
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Transcriptomic and proteomic analysis of mouse radiation– induced acute myeloid leukaemia (AML)
... proteomics analysis suggested that Talin 1 might be involved in the late stage release of leukaemic cells from the bone marrow into the peripheral circulation and subsequent tissue ...
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Neuropeptide precursors and neuropeptides in the sea cucumber Apostichopus japonicus: a genomic, transcriptomic and proteomic analysis
... analysis Muyan Chen 1 , Alzbeta talarovicova 2 , Yingqiu Zheng 1 , Kenneth B. storey 3 & Maurice R. elphick 2 the sea cucumber Apostichopus japonicus is a foodstuff with very high economic value in China, Japan ...
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Multi scale genomic, transcriptomic and proteomic analysis of colorectal cancer cell lines to identify novel biomarkers
... expression analysis, reverse phase protein arrays, and targeted sequencing of KRAS hotspot ...ment analysis showed that differentially expressed genes with respect to ...
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Ageing characteristics of bone indicated by transcriptomic and exosomal proteomic analysis of cortical bone cells
... Chenyang Zhang 1 , Shuyu Xu 1 , Shufan Zhang 1 , Mengmeng Liu 1 , Haiming Du 1 , Ruinan Sun 1 , Bo Jing 2 and Yao Sun 1* Abstract Background: Degenerative changes in the skeleton play an important role in ageing. As the ...
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Evaluation of proteomic and transcriptomic biomarker discovery technologies in ovarian cancer
... quantitative proteomic analysis of ovarian cancer specimens sourced from primary debulking surgery, listed decorin, alongside 44 other proteins, to have significantly higher expression in the cases that ...
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Global response of Plasmodium falciparum to hyperoxia: a combined transcriptomic and proteomic approach
... using transcriptomic and proteomic techniques was ...microarray analysis, this study demonstrate up-expression of genes involved in antioxidant systems and down-expression of genes involved in the ...
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Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum
... in the proteomic analysis under either butanol or butyr- ate stress. Among the detected 57 proteins, the majority was downregulated under butanol stress despite higher transcriptional levels. Overall, there ...
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Proteomic analysis of the Theileria annulata schizont
... a b s t r a c t The apicomplexan parasite, Theileria annulata, is the causative agent of tropical theileriosis, a devastating lymphoproliferative disease of cattle. The schizont stage transforms bovine leukocytes and ...
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Proteomic and transcriptomic analysis of the Protozoan Parasite Neospora caninum
... This analysis has utilized the powerful technique of gel separation followed by liquid chromatography and mass spectrometry to confidently identify almost 20 % of the ...one proteomic platform, as the vast ...
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Integrated quantitative proteomic and transcriptomic analysis of lung tumor and control tissue: a lung cancer showcase
... whether specific proteins are higher or lower abundant in tumor relative to control tissue. Paired two-tailed t-tests that have been carried out for each protein separately and adjusted for multiple testing using ...
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Integrated transcriptomic and proteomic analyses uncover regulatory roles of Nrf2 in the kidney
... global analysis of the biological processes that are regulated by Nrf2 in the kidney in vivo had not been ...integrated transcriptomic and proteomic approach, we have demonstrated that the kidneys of ...
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Proteomic and meta-transcriptomic study on lymph node metastasis in gastric cancer
... For protein quantification, only nonconflicting peptides (i.e., peptides occurring in only one protein) were selected. After summing up the abundances of all the peptides allocated to each protein, the results of 48 ...
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Transcriptomic and Proteomic Approaches to Finding Novel Diagnostic and Immunogenic Candidates in Pneumocystis
... Analysis of gene expression. Raw reads from Illumina Genome Analyzer IIx in fastq format were trimmed to remove adaptor/primer sequences. Trimmed reads were then aligned using BWA (version 0.5.9, settings aln -o 1 ...
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The effect of dicarbonyl stress on the development of kidney dysfunction in metabolic syndrome – a transcriptomic and proteomic approach
... at transcriptomic, proteomic and metabolomic ...urinary proteomic and metabolomic analysis, which reflected the kidney gene expression changes we ...
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Prediction of toxin genes from Chinese yellow catfish based on transcriptomic and proteomic sequencing
... multi-omics analysis, but also a novel multi-omics pipeline (Figure 1) and a comprehensive database Hidden Markov Models (HMM) for the excavation of fish venoms, which can also be used for reference for the venom ...
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Widespread epigenomic, transcriptomic and proteomic differences between hip osteophytic and articular chondrocytes in osteoarthritis.
... This study provides a systematic molecular characteriza- tion of osteophytic chondrocytes in OA across genome- wide methylation, gene and protein expression levels. We have shown widespread molecular differences be- ...
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Widespread epigenomic, transcriptomic and proteomic differences between hip osteophytic and articular chondrocytes in osteoarthritis
... enrichment analysis showed that differences between osteophytic and low-grade articular cartilage chondrocytes are associated with extracellular matrix organization, skeletal system development, platelet ...
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