[PDF] Top 20 An adaptive annotation approach for biomedical entity and relation recognition

... ulated) annotation of only 40 sentences already predicted an adequate amount of suggestions where users can quickly accept or modify and proceed to the next ... See full document

... closest approach to our investigation in the biomedical domain is (Wang et ...different annotation schema (GENIA - 2000 Medline abstracts, GENETAG - approx- imately 20,000 Medline sentences and AIMed ... See full document

... In fact, besides being the more frequent one, after a deeper analysis of the papers, we consider ML the main method in this population. It is directly or indirectly used in the great majority of the articles. Even inside ... See full document

... Semantic Annotation produces metadata with respect to a given ontology, allowing users to search across textual resources for entities and relations instead of words (Bontcheva, Duke, Glover, & Kings, 2006; ... See full document

... of entity men- tions (rather than ...reference annotation twice: if a predicted entity is otherwise correct but ...standard entity, the predicted mention is considered a false positive, and ... See full document

... named entity recognition, noun phrase co-reference resolution, semantic role recognition, entity relation recognition, and date and timeline ...Named Entity ... See full document

... an approach to enrich French biomedical ontologies in SIFR BioPortal with UMLS CUIs and semantic types in order to improve the annotation performance of SIFR annotator for UMLS based NER ...the ... See full document

... non-standard entity and relation types is an important task in many real-world information extraction applications like relation extraction, knowledge base con- struction and question ... See full document

... the approach, and to test its applicability to the clinical ...hand annotation of training data is the major expense in supervised machine ...imperfect entity recognition on rela- tion ... See full document

... an approach for biomedical entity recognition based on dictionary lookup and flexible ...Their approach has been used in several competitive evaluations of biomedical text mining ... See full document

... (AT) approach. The rule-based approach was applied to information that matched simple patterns, or occurred in regular contexts, such as national grid references and ...AT approach the ADS staff, all ... See full document

... We investigated the model adaptation problem for named entity recognition where the base model is a discriminatively trained HMM (Collins, 2002). We hypothesized that part of the loss incurred in using a ... See full document

... Initially we applied the sound signal to this component, the input signals are induced to this component directly or first we can record it, after that the recorded sound may be injected to it, the input sound will be ... See full document

... In this paper, we propose a domain adaptive bootstrapping (DAB) approach to tackle the do- main adaptation problem under the setting [S+T-]. Bootstrapping is an iterative process that uses a trained ... See full document

... pass). Then annotators met to discuss issues and prob- lems they encountered during the first annotation pass. The guidelines were extensively clarified and modified accord- ingly. Subsequently, annotators ... See full document

... Bio-NER has more difficulties than normal NER because technical terms in biomedical texts have unusual characteristics. We compared various machine-learning approaches based on CRFs and RNN. In this research, RNN ... See full document

... The Adaptive Algorithm Thought and the Pro- cess ...pattern recognition, and has achieved very good effect on pre-classification of characters in Chinese character recognition [8] and classification ... See full document

... The annotation of those ontology event and re- lation instances described in text was initiated in the biomedical domain by the GENIA corpus (Kim et ...standard biomedical ontolo- gies ... See full document

... multiple biomedical NLP tasks, such as as- sertion classification for clinical concepts [6], supervised WSD in MEDLINE [7], high-throughput phenotype iden- tification tasks using EHR data [8], and clinical NER ... See full document

... Information Extraction (IE) aims at mapping texts into fixed structure representing the key information. A typical IE system will try to answer the questions like who are present in the text, what events happen and when ... See full document