[PDF] Top 20 Generalizing Biomedical Event Extraction
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Generalizing Biomedical Event Extraction
... the event extrac- tion approach can offer working solutions for several biomedical ...separate extraction systems. It could well be that the future of event extraction re- quires also ... See full document
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Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation
... Our approach to finding the maximizer is dual de- composition (Komodakis et al., 2007; Rush et al., 2010), a technique that allows us to exploit effi- cient search algorithms for tractable substructures of our problem. ... See full document
5
A multiple distributed representation method based on neural network for biomedical event extraction
... and event extrac- tion in Tables 4 and ...on biomedical event extraction tasks compared to the baseline approach using SVM with manually complex ...from event types appearing too seldom ... See full document
8
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing
... Lisheng Fu, Thien Huu Nguyen, Bonan Min, and Ralph Grishman. 2017. Domain adaptation for re- lation extraction with domain adversarial neural net- work. In Proceedings of the Eighth International Joint Conference ... See full document
11
Biomedical Event Extraction by Multi class Classification of Pairs of Text Entities
... extracting event for- mulas from text sentences, which are defined as sequences of tokens (words, numbers, or sym- ...an event trigger and one or several arguments. The event trigger is a sequence of ... See full document
5
Coreference based event-argument relation extraction on biomedical text
... Let us summarise the data and tools we employ. The data for our experiments is the GENIA Event Corpus (GEC) [1]. For feature generation, we employ the following tools. POS and NE tagging are performed with the ... See full document
14
Improving Feature Based Biomedical Event Extraction System by Integrating Argument Information
... the event, and edge detection component is used to identify the ar- guments that undergo the ...on event argument types and combinations defined in the shared ... See full document
7
Biomedical Event Extraction from Abstracts and Full Papers using Search based Structured Prediction
... the event extraction de- composition, which become even sparser using this domain adaptation method, thus rendering the learn- ing of appropriate weights for them ... See full document
5
Event Extraction as Dependency Parsing
... Nested event structures are a common occur- rence in both open domain and domain spe- cific extraction tasks, ...“crime” event can cause a “investigation” event, which can lead to an “arrest” ... See full document
10
Event extraction for DNA methylation
... of biomedical information extraction (IE), most efforts have focused on the foundational task of detecting mentions of enti- ties of interest and the extraction of simple associations between these ... See full document
15
Liberal Event Extraction and Event Schema Induction
... Liberal event extraction framework which combines the merits of symbolic semantics and distributed ...and biomedical domain demonstrate that this framework can discover explicitly defined rich ... See full document
11
A Compositional Interpretation of Biomedical Event Factuality
... the biomedical literature has been to distinguish facts from speculative, tentative knowl- edge (Light et ...tion extraction systems, and they often settle for as- signing discrete values to propositional ... See full document
10
Biomedical event extraction from abstracts and full papers using search-based structured prediction
... the event type correctly in most ...one event type, there are some whose event type is determined by the context, ...Regulation event but in “positive regulation” it denotes a ... See full document
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Fast Recursive Multi class Classification of Pairs of Text Entities for Biomedical Event Extraction
... of biomedical documents, such as molecular biology reports or genomic papers are generated ...from biomedical text. Efforts specifically dedicated to biomedical text are nec- essary because standard ... See full document
10
A memory based learning approach to event extraction in biomedical texts
... extracts event frames from biomedical texts in three ...frame extraction task was modeled applying the same approach that has been applied to tasks like se- mantic role labeling or negation scope ... See full document
9
Semi-supervised method for biomedical event extraction
... An SVM multi-class classifier, which proved to have ability of good classification, is used for the experiment. The LibSVM tool [20] which is one of the best multi- class SVM tools presently available is used. The goal ... See full document
10
Biomedical Event Extraction using Abstract Meaning Representation
... the biomedical community has been working towards the goal of creating a curated knowledge base of biomolecule entity in- ...Genia Event Extraction shared tasks (Kim et ...biomolecule event ... See full document
10
Fast and Robust Joint Models for Biomedical Event Extraction
... of biomedical text mining has been the extraction of named entities, such genes or gene products, and of flat binary relations be- tween such entities, such as protein-protein interac- ...the ... See full document
12
New Resources and Perspectives for Biomedical Event Extraction
... We first introduce a non-textbound annotation for- mat that normalizes over differences in e.g. argu- ment order and eliminates duplicate events. The for- mat largely follows that of the shared task but re- moves any ... See full document
9
Semantic Parsing for Biomedical Event Extraction
... extract biomedical events from biomedical ...for biomedical events ...for biomedical event are more ...of biomedical events in different context. Second, biomedical events ... See full document
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