[PDF] Top 20 Multilocus sequence typing as a replacement for serotyping in salmonella enterica
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Multilocus sequence typing as a replacement for serotyping in salmonella enterica
... the sequence data by a gene by gene bootstrap approach as described by Falush et ...subspecies enterica identified only four clusters other than Lineage 3, each containing isolates from one to three eBGs ... See full document
20
Multilocus Sequence Typing System for Group B Streptococcus
... by multilocus enzyme electrophoresis ...recombinational replacement of this gene with that from an isolate of a different serotype would result in a change of capsular ...capsular serotyping may be ... See full document
7
Multilocus Variable Number Tandem Repeat Method for Typing Salmonella enterica Serovar Newport
... and multilocus sequence typing, as well as having strong correspondence with epidemiological ...for Salmonella enterica se- rovar Typhimurium (4), and discrepancies between PFGE and ... See full document
5
Comparison of Multilocus Sequence Typing, Pulsed Field Gel Electrophoresis, and Antimicrobial Susceptibility Typing for Characterization of Salmonella enterica Serotype Newport Isolates
... S. enterica serovar Newport collection compared with PFGE ...other Salmonella serotypes as well (13, 14, 40, ...S. enterica using the same seven-gene MLST scheme used in this study and found that ... See full document
9
Multilocus Sequence Typing for Characterization of Clinical and Environmental Salmonella Strains
... the typing of Salmonella strains, such as multilo- cus enzyme electrophoresis (2), as well as DNA-based meth- odologies, including arbitrarily primed PCR (15), pulsed-field gel electrophoresis (PFGE) (32), ... See full document
10
Variable Number of Tandem Repeats in Salmonella enterica subsp enterica for Typing Purposes
... laboratories. Multilocus sequence typing (MLST) (21) and its recent introduction for the characterization of Salmo- nella strains (15) has opened the way to standardization of data handling and the ... See full document
9
Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR MVLST and Determination of the Relationship between CRISPR MVLST and PFGE Results
... initial typing of ...two sequence types had different-sized CRISPR2 alleles (com- pare the same lanes in the lower gel), confirming that size in- spection of both CRISPR alleles can be used for rapid ... See full document
9
Multi-locus sequence typing of Salmonella enterica subsp. enterica serovar Enteritidis strains in Japan between 1973 and 2004
... Salmonella enterica subsp. enterica serovar Enteritidis ...using multilocus sequence typing ...phage typing and pulsed-field profiling has a highly clonal ... See full document
6
Multilocus Sequence Typing Lacks the Discriminatory Ability of Pulsed Field Gel Electrophoresis for Typing Salmonella enterica Serovar Typhimurium
... buffer (50 mM Tris, 50 mM EDTA [pH 8.0], 1% Sarcosine, and 0.1 mg of proteinase K per ml). Plugs were incubated in this buffer for 2 h at 54°C in a shaking water bath. Plugs were then washed twice with water and four ... See full document
5
Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
... 10. Boxrud D, Pederson-Gulrud K, Wotton J, Medus C, Lyszkowicz E, Besser J, Bartkus JM: Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for ... See full document
5
Multiplex Strategy for Multilocus Sequence Typing, fla Typing, and Genetic Determination of Antimicrobial Resistance of Campylobacter jejuni and Campylobacter coli Isolates Collected in Switzerland
... overtaking Salmonella infection ...Campylobacter typing by applying various, mostly ge- netic, methods is used for this ...flaA typing based on the restriction analysis of PCR-amplified fragments or ... See full document
12
Comparing Pulsed Field Gel Electrophoresis with Multilocus Sequence Typing, spa Typing, Staphylococcal Cassette Chromosome mec (SCCmec) Typing, and PCR for Panton Valentine Leukocidin, arcA, and opp3 in Methicillin Resistant Staphylococcus aureus Isolates at a U S Medical Center
... strain typing to classify Staphylococcus aureus have been used in the past 3 ...into sequence-based (e.g., multilocus sequence typing [MLST]) and non-sequence-based ...the ... See full document
6
A comparison of serotyping, phage typing, antibiotic sensitivity, and plasmid profile analysis in a study of Salmonella dublin
... A comparison of serotyping, phage typing, antibiotic sensitivity, and plasmid profile analysis in a study of Salmonella dublin Kathleen E.. Ferris Iowa State University.[r] ... See full document
76
Multilocus sequence typing breathes life into a microbial metagenome
... strain typing methods such as pulsed-field gel electrophoresis (PFGE) and PCR-based fingerprinting to track infection and develop infection control measures to prevent transmission ...a multilocus ... See full document
9
Serotype epidemiology and multidrug resistance patterns of Salmonella enterica infecting humans in Italy
... S. enterica isolates. On the basis of the Kauffmann-White serotyping, three samples were positive for typhoidal Salmonella strains: two isolates were typed as Salmonella typhi, whereas one ... See full document
7
Multilocus sequence typing (MLST), porA and flaA typing of Campylobacter jejuni isolated from cats attending a veterinary clinic
... selected multilocus sequence typing (MLST) ...into sequence types (ST) which in turn can be grouped into clonal complexes (CC) ...with typing of flaA and porA sequences ... See full document
6
Multilocus Sequence Typing of Pathogenic Candida Species
... Strain typing facilitates tracing of sources and routes of transmission of infection ...for typing is designed to reveal differences between strain types and is usually assessed statistically for its ... See full document
10
Multilocus Sequence Typing for Characterization of Staphylococcus pseudintermedius
... unique sequence types (STs) (Table ...MLST-4 sequence types ST9 and ST100 are no longer differentiated with MLST-7; however, ST100 is fur- ther divided into MLST-7 ST54 and ... See full document
5
Multilocus Sequence Typing Scheme for Enterococcus faecium
... A multilocus sequence typing (MLST) scheme has been developed for Enterococcus ...62 sequence types were detected in vancomycin-sensitive ... See full document
10
Multilocus Sequence Typing System forCampylobacter jejuni
... Campylobacter isolates. C. jejuni isolates were obtained from the collection held at Preston Public Health Laboratory, Preston, United Kingdom (35), and included isolates from cases of human campylobacteriosis, ... See full document
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