[PDF] Top 20 Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov.

... E. timonensis is susceptible to amoxicillin- clavulanic acid, metronidazole, imipenem, vanco- mycin, rifampicin, gentamicin and resistant to penicillin G, amoxicillin, ceftriaxon, erythromycin, and ... See full document

... The genome is 4,186,486 bp long (one chromo- some but no plasmid) with a 59.73% GC content (Table 3 and Figure 5). Of the 3,901 predicted genes, 3,847 were protein-coding genes, and 54 were RNAs. A total of 2,924 ... See full document

... formed against the non-redundant GenBank data- base using BLASTP. Functional categories of these proteins were searched against the Clusters of Orthologous Groups (COG) database using COGNITOR [31]. The prediction ... See full document

... rRNA sequence cutoff values [3] with the plethora of new information provided by high throughput genome sequencing and mass spec- trometric analyses of bacteria ... See full document

... complete genome sequence and annotation. The 3,425,960 bp long genome (1 chromo- some but no plasmid) contains 3,064 protein-coding and 49 RNA ... See full document

... are non- endospore forming and are ...the genome is 36.40%. The 16S rRNA and genome sequences are deposited in Genbank under acces- sion numbers JX424771 and CAVG00000000, re- ... See full document

... senegalensis and [5-11], thus suggesting that the human digestive flora is far from being fully known. The fecal specimen was preserved at -80°C after collection and sent to Marseille. Strain JC225 (Table 1) was isolated ... See full document

... arginine arylamidase, tyrosine arylamidase, histidine arylamidase and leucine arylamidase. Cells are susceptible to penicillin G, amoxicillin, ceftriaxone, cefalexin, imipenem, fosfomycin, erythromycin, doxycyclin, ... See full document

... This latter value was lower than the 98.7% 16S rRNA gene sequence threshold recommended by Stackebrandt and Ebers to delineate a new species without carrying out DNA-DNA hybridization [40]. Different growth ... See full document

... massiliensis sp. nov. This bacterium is a Gram- negative, non-sporulating, anaerobic and non- motile coccobacillus that was isolated from the stool of an HIV-infected patient as part of a ... See full document

... high-throughput genome sequencing and proteomic analyses [6] provided a source of exhaustive information about characterized bac- terial ...their genome sequence, MALDI-TOF spectrum and main ... See full document

... complete genome sequence and its annotation. The 1,966,996 bp-long genome contains 1,710 protein-coding and 46 RNA genes, including 6 rRNA ... See full document

... 4,616,135 bp long (1 chromosome, but no plas- mid) with a 34.10% G + C content (Figure 6 and Table 4). Of the 4,519 predicted genes, 4,432 were protein-coding genes, and 87 were RNAs. Eight rRNA genes (one 16S rRNA, one ... See full document

... 3,735,762 bp long (1 chromosome, but no plas- mid) with a 27,98% G + C content of (Figure 6 and Table 4). Of the 3,916 predicted genes, 3,843 pro- tein-coding genes, and 73 were RNAs. Eight rRNA genes (one 16S rRNA, one ... See full document

... complete genome sequence and annotation. The 5,431,633 bp long genome (1 chromosome but no plasmid) contains 5,179 protein-coding and 98 RNA genes, including 91 tRNA ... See full document

... The genome is 3,771,216 bp long with 64,30% G+C content (Table 4, Figure 6). It is composed of 73 contigs (54 contigs are >1,500 bp) arranged into 6 scaffolds. Of the 3,812 predicted genes, 3,761 were ... See full document

... complete genome sequence and its annotation. The 2,010,844 bp-long genome con- tains 1,909 protein-coding and 46 RNA genes, including two rRNA ... See full document

... To estimate the mean level of nucleotide se- quence similarity at the genome level between C. massiliensis and the other 4 members of the ge- nus Collinsella (Table 6), we used the Average Genomic Identity Of gene ... See full document

... This value was lower than the 98.7% 16S rRNA gene sequence threshold recommended by Stackebrandt and Ebers to delineate a new species without carrying out DNA-DNA hybridization [2]. It should be noted that both A. ... See full document

... Clostridium ihumii (i.hum.i’i. N.L. gen. n. ihumii, based on the acronym IHUMI, the Institut Hospitalo- Universitaire Méditerranée-Infection in Marseille, France, where the type strain was isolated). The type strain AP5 ... See full document