[PDF] Top 20 Polymorphism of Variable Number Tandem Repeats at Multiple Loci in Mycobacterium tuberculosis
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Polymorphism of Variable Number Tandem Repeats at Multiple Loci in Mycobacterium tuberculosis
... Thirty-nine loci were polymorphic and will therefore be referred to as VNTR instead of DR or exact tandem repeats (ETR) as previously described ...Two loci were previously described to be ... See full document
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Combination of Single Nucleotide Polymorphism and Variable Number Tandem Repeats for Genotyping a Homogenous Population of Mycobacterium tuberculosis Beijing Strains in China
... of tuberculosis (TB) has enhanced our understanding of this ancient ...length polymorphism (RFLP), spoligotyping, and variable- number tandem repeat (VNTR) analysis, have been ... See full document
7
Stability of Variable Number Tandem Repeats of Mycobacterial Interspersed Repetitive Units from 12 Loci in Serial Isolates of Mycobacterium tuberculosis
... Variable number tandem repeats (VNTRs) of elements named mycobacterial interspersed repetitive units (MIRUs) have previously been identified in 12 minisatellite loci of the ... See full document
6
Molecular Typing of Mycobacterium tuberculosis by Using Nine Novel Variable Number Tandem Repeats across the Beijing Family and Low Copy Number IS6110 Isolates
... M. tuberculosis has the potential to significantly impact both clinical practice and pub- lic ...M. tuberculosis genotyping method, IS6110 re- striction fragment length polymorphism (RFLP) analysis, ... See full document
7
DNA Markers Evaluation to Preparing a Genetic Database for Identification in Crimes and Incidents
... Variable number of tandem repeats (VNTRs) are DNA fragments comprised of repetitive units made up of 7-25 nucleotides which are ...the number of repetitive ...high polymorphism ... See full document
5
Genetic Diversity of Mycobacterium africanum Clinical Isolates Based on IS6110 Restriction Fragment Length Polymorphism Analysis, Spoligotyping, and Variable Number of Tandem DNA Repeats
... as Mycobacterium africanum were characterized using both phenotypic and genotyping ...M. tuberculosis complex, whereas genotypic characterization was based on IS6110-restriction fragment length ... See full document
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Proposal of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive Unit–Variable Number Tandem Repeat Loci for Subtyping of Mycobacterium tuberculosis Beijing Isolates
... hyper- variable 4-locus set, versus 4 among the 24 standard loci (which is also fully in line with the approximately 5% of single-locus varia- tions previously measured among 12- or 24-locus genotypes from ... See full document
9
Implementation of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive Unit–Variable Number Tandem Repeat Loci in Mycobacterium tuberculosis Molecular Epidemiology
... A possible transitional strategy might involve the inclusion of additional MIRU-VNTR markers to the standard set. In this re- gard, four novel MIRU-VNTR loci, i.e., 1982, 3232, 3820, and 4120, have recently been ... See full document
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Genetic Diversity of Mycobacterium tuberculosis in Sicily Based on Spoligotyping and Variable Number of Tandem DNA Repeats and Comparison with a Spoligotyping Database for Population Based Analysis
... M. tuberculosis genomes through individual as well as combined numerical phylogenetic analysis will help shed light on the monophyletic versus the poly- and/or paraphyletic hypothesis of tuberculosis ... See full document
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High Genetic Diversity Revealed by Variable Number Tandem Repeat Genotyping and Analysis of hsp65 Gene Polymorphism in a Large Collection of “Mycobacterium canettii” Strains Indicates that the M tuberculosis Complex Is a Recently Emerged Clone of “M canettii”
... motifs to explain the hundreds of different combinations seen in contemporary MTBC strains (6). The fact that strains which lack a DR locus have highly diverged genotypes (here, for instance, strain percy65, [Fig. 2] and ... See full document
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Comparison of Variable Number Tandem Repeat and IS6110 Restriction Fragment Length Polymorphism Analyses for Discrimination of High and Low Copy Number IS6110 Mycobacterium tuberculosis Isolates
... M. tuberculosis is IS6110 re- striction fragment length polymorphism (IS6110-RFLP) anal- ysis ...M. tuberculosis isolates having identical IS6110 fingerprints poten- tially represent the recent ... See full document
5
Clustering of Tuberculosis Cases Based on Variable Number Tandem Repeat Typing in Relation to the Population Structure of Mycobacterium tuberculosis in the Netherlands
... Multiple imputation was used to account for 184 (5%) and 37 (1%) of 3,776 cases with missing data for the variables “time since immigration at TB diagnosis” and “gender,” respectively. All re- maining variables ... See full document
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Novel Multiple Locus Variable Number Tandem Repeat Analysis Method for Rapid Molecular Typing of Human Staphylococcus aureus
... two loci (SIRU01 and -07) (spa types re- mained identical) were seen in isolates from patient 1 recov- ered 7 years after the first isolate was ...the number of RUs determined by MLVA for SIRU21, ... See full document
5
Use of Variable Number Tandem Repeats To Examine Genetic Diversity of Neisseria meningitidis
... of variable tandem repeats. The majority of the tandem repeat loci in meningococci are in or near genes that encode proteins with phase-variable properties (30, ...of ... See full document
7
Multilocus Variable Number Tandem Repeat Typing of Mycobacterium ulcerans
... Beyond this comparison with the Mexican isolates, the South American isolates appeared distantly related to the M. ulcerans strains from the other geographic regions in general. Consis- tently, the isolate from Surinam ... See full document
6
First Worldwide Proficiency Study on Variable Number Tandem Repeat Typing of Mycobacterium tuberculosis Complex Strains
... M. tuberculosis complex strains after its standardization in ...limited number of experienced laboratories at both the intra- and interlaboratory levels (5, 16, 17, 24, ...VNTR loci, and nontechnical ... See full document
8
Detection of multiple strains of Mycobacterium tuberculosis using MIRU VNTR in patients with pulmonary tuberculosis in Kampala, Uganda
... differentiate Mycobacterium tuberculosis (MTB) strains reveal single strains in cultures, suggesting that most disease is caused by infection with a single ...amplify multiple targets have ... See full document
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Development of Variable Number Tandem Repeat Typing of Mycobacterium bovis: Comparison of Results with Those Obtained by Using Existing Exact Tandem Repeats and Spoligotyping
... VNTR loci, described as exact TR A through F (ETR-A, -B, -C, -D, -E, and -F), were reported and applied to human ...M. tuberculosis isolates ...M. tuberculosis or ...polymorphic repeats, ... See full document
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Identification and Characterization of Variable Number Tandem Repeats in the Yersinia pestis Genome
... M34 loci; mix 2 contained primers for the M12, M23, M31, M58, and M82 loci; mix 3 contained primers for the M27, M29, and M33 loci; and mix 4 contained primers for the M22, M25, and M59 ... See full document
7
Association of serotonin and dopamine gene pathways with behavioural subphenotypes in dementia
... a multiple indicators-multiple causes (MIMIC) approach to investigate the effect of 11 polymorphisms on the 4 behavioral subphenotypes “psychosis”, “moods”, “agitation”, and “behavioural ...(SERT) ... See full document
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