[PDF] Top 20 Statistical Tests for Identification of Differentially Expressed Genes in Microarray Data
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Statistical Tests for Identification of Differentially Expressed Genes in Microarray Data
... of genes [1]. Microarray studies produce very large-scale data sets, requiring statistical methods planned for their ...of microarray studies is to find genes with different ... See full document
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Original Article Identification of differentially expressed genes between male and female patients with acute myocardial infarction based on microarray data
... hub genes identified in our study on AMI were not clearly understood so more stud- ies are still needed to further understand the differences between men and women in terms of ... See full document
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Batch correction of microarray data substantially improves the identification of genes differentially expressed in Rheumatoid Arthritis and Osteoarthritis
... Batch-corrected data then allowed the identification of differentially expressed genes discriminating between RA and ...original data, as demonstrated by preservation of the main ... See full document
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Microarray data analysis: a practical approach for selecting differentially expressed genes
... the identification of those genes determined significantly ...represents genes below the 99.9% confidence level, ( ) represents those genes selected by the 5% fold change model, and (+) ... See full document
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Tool for the identification of differentially expressed genes using a user-defined threshold
... of microarray technology has been a significant asset to scientific research by saving researchers time and effort, but these researchers are faced with the challenge of the analysis of the microarray ... See full document
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Bioinformatics analysis of differentially expressed genes in rotator cuff tear patients using microarray data
... Target genes list were submitted to the DAVID ...of Genes and Genomes (KEGG) is a knowledge base for systematic ana- lysis of gene functions, linking genomic information with higher-level systemic ... See full document
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Investigation of reproducibility of differentially expressed genes in DNA microarrays through statistical simulation
... of microarray technology because of the lack of reproducibility of differentially expressed genes (DEGs) from highly similar studies across laboratories and ...the MicroArray Quality ... See full document
5
Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
... and data generation phases of expression microarrays and RNA-Seq technologies, and these attributes are compared elsewhere ...For data analysis there are three major steps for both technologies: data ... See full document
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Analysis of striatal transcriptome in mice overexpressing human wild-type alpha-synuclein supports synaptic dysfunction and suggests mechanisms of neuroprotection for striatal neurons
... the data from the microarray was assessed (see Table 1 and Additional file 1 Figure S1) by inspecting: (1) the percentage of genes called present (include all changed genes p < ...833 ... See full document
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Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis
... and statistical-analysis strategies agree in detecting dif- ferentially expressed ...many genes are detected as differentially expressed by how many data- analysis ...the ... See full document
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Identification of differentially expressed genes and signaling pathways in ovarian cancer by integrated bioinformatics analysis
... genetic data, gene expression microarrays have been widely used to collect gene chip expression profiling data and to study gene expres- sion profiles in many human ...tumor-related genes and offer ... See full document
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Identification of differentially expressed genes in fibroblasts derived from patients with Dupuytren's Contracture
... identify genes that are differentially expressed in fibroblasts derived from DC-affected palmar fascia versus those derived from normal ...The data from both platforms were analyzed using the ... See full document
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Genome-wide RNAseq study of the molecular mechanisms underlying microglia activation in response to pathological tau perturbation in the rTg4510 tau transgenic animal model
... Another potential limitation of our study is that we used pooled microglia for RNAseq analysis. It is possible that differential and distinct activation status existed at individual cell level. Following recent technical ... See full document
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Identification of differentially expressed genes involved in the regression and development of the chicken Müllerian duct
... is expressed mainly in neuronal tissue and similar to the other 5 classes of PLC isozymes is involved in protein kinase C activation and calcium ...is expressed in the Müllerian duct during the ... See full document
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Comparative transcriptome analyses of Pseudomonas aeruginosa
... unique genes identified under the various conditions used in these ...example, genes of the secreted factors group (encoding toxins, enzymes, alginate) constitute 7 per cent of the differentially ... See full document
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Data Mining in Networks of Differentially Expressed Genes during Sow Pregnancy
... identify differentially expressed genes in pig granu- losa cells along the terminal ovarian follicle growth and showed in particular the down-regulation of ri- bosomal protein, cell morphology and ... See full document
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Comprehensive analysis of DNA methylation and gene expression profiles in cholangiocarcinoma
... two genes can be used for the differential diagnosis between cholangiocarcinoma and other biliary diseases ...specific genes with aberrant DNA methyla- tion or individual gene methylation profiling microar- ... See full document
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Gene Expression Analysis in Aspergillus flavus Identified a Gene, ahpA, Involved in Protection Against Organic Peroxides.
... identify genes that are essential for particular processes in Aspergillus, particularly those that function in secondary ...of expressed sequence tags (ESTs) from ...sequence data generated from all ... See full document
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Comparison of regional gene expression differences in the brains of the domestic dog and human
... Similarly , the clustering of dogs in Figure 2 tends to indicate that any differential gene expression between dogs within brain regions also is not breed specific. Transcript abundance is remarkably uniform in the five ... See full document
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Ste12 Transcription Factor Homologue CpST12 Is Down-Regulated by Hypovirus Infection and Required for Virulence and Female Fertility of the Chestnut Blight Fungus Cryphonectria parasitica
... Saccharomyces cerevisiae transcription factor Ste12 is acti- vated in response to stimulation by mating pheromones through a G-protein-coupled receptor, leading to the induction of various genes required for ... See full document
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