Analysis of venom composition; venomics and transcriptomics
Novel pattern recognition approaches for transcriptomics data analysis
... for transcriptomics and genomics data analysis based on multi-level thresholding approach, such as OMTG for sub-grid and spot detection in DNA microarrays, and OMT for detecting significant regions based on ...
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BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
... and transcriptomics data using a biologist-friendly web interface, without the need for programming ...binding analysis, and creation of average tag -density profiles and ...
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Novel pattern recognition approaches for transcriptomics data analysis
... for transcriptomics and genomics data analysis based on multi-level thresholding approach, such as OMTG for sub-grid and spot detection in DNA microarrays, and OMT for detecting significant regions based on ...
170
Novel workflow for metagenomics and transcriptomics analysis of A.D. systems
... This project results in the creation of a metagenomics analysis pipeline supported by de novo transcriptomics (MUFFIN). That is reproducible, automated, and simple of utilisation. This pipeline can use ...
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Widescale analysis of transcriptomics data using cloud computing methods
... “Omics” refers to fields of biological study such as genomics, proteomics and transcriptomics. It has come to refer generally to the study of large, comprehensive biological datasets, though it can infer the ...
237
Computational framework for systematic and scalable analysis of deep sequencing transcriptomics data
... Master’s thesis November 9, 2012 59 + 3 pages RNA-seq, high-throughput sequencing, exon array, cancer, bioinformatics, pipeline High-throughput technologies have had a profound impact in transcriptomics. Prior to ...
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Transcriptomics and proteomics analysis to identify molecular mechanisms associated with meat quality traits
... proteomics analysis to identify molecular mechanisms associated with meat quality traits Boar taint and water holding capacity (WHC) are important quality criteria in pig production and affect the financial ...
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Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells
... Conclusions In this paper, we have analyzed human embryonic and induced pluripotent stem cells with two different methods for finding associations between genomic varia- tions i.e. SNPs and CNVs, and the ...
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Comparative analysis of sequencing technologies for single cell transcriptomics
... Since we generated mESC data from different scRNA protocols, technologies, and sequencing platforms contain- ing ERCC spike-ins in two different batches, we collectively assessed the mESCs performance metrics for both ...
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Genomics and Transcriptomics Analysis of Metal Accumulator Plants in Brassicaceae
... functional analysis in Arabidopsis thaliana and QTL mapping in Brassicas, could greatly contribute towards a better understanding of the genetic architecture for the conserved as well as the evolved traits of ...
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Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis
... Next maSigPro [53] is an updated version of maSigPro, an R package on Bioconductor (http://www.bioconductor.org) initially developed for microarray TC experiments. The updated version allows the analysis of ...
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Understanding transcriptional regulation through computational analysis of single-cell transcriptomics
... The FastQC results for a representative iPSC sample from the single-cell RNAseq data was analysed and used to illustrate the general technical properties of the data in Figure 4.6. Figure 4.6A show that each base ...
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NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)
... The functional annotation of unigene, GO category and KEGG pathway analysis With NR annotation, we used the Blast2GO program to get the GO annotation of unigenes. Information of func- tional annotations provided ...
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Analysis and Integration of Big Data from Next-Generation Genomics, Epigenomics, and Transcriptomics
... V regions in Igh locus are associated with CTCF sites In addition, each CTCF site associated with V regions is in a consistent orientation.. CTCF Orientation at D/J regions.[r] ...
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Transcriptomics and knockout mutant analysis of rhizobacteria-mediated induced systemic resistance in Arabidopsis
... Transcriptome analysis revealed that ISR-expressing leaves are primed for augmented expression of predominantly jasmonate- and ethylene-responsive genes, which may allow the plant to react more effectively to the ...
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Comparative venom gland transcriptomics ofNaja kaouthia(monocled cobra) from Malaysia and Thailand: elucidating geographical venom variation and insights into sequence novelty
... the venom genes, three-finger toxins (3FTxs) predominated in the expression, with multiple sequences ...Comparative analysis and selection study revealed that 3FTxs are genetically conserved between the ...
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Transcriptomics of the human endometrium
... using NGS platforms is likely to be challenged by newer global gene-expression analysis technologies, as reported by the MAQC consortium (Mane et al., 2009). While RNA-seq technology is improving the precision of ...
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Advances in Swine Transcriptomics
... serial analysis of gene expression, and EST sequence frequency, as well as closed methods that measure expression of a defined set of sequences such as hybridization to membrane arrays and ...transcriptome ...
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Combination of label-free quantitative proteomics and transcriptomics reveals intraspecific venom variation between the two strains of Tetrastichus brontispae, a parasitoid of two invasive beetles
... ACCEPTED MANUSCRIPT peptides were loaded on a trap column (Thermo Scientific Acclaim PepMap 100, 3 cm long 100 μm i.d., nano Viper C18) by an autosampler, followed by separation on an analysis column (Thermo ...
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Tricks to translating TB transcriptomics
... Abstract: Transcriptomics and other high-throughput methods are increasingly applied to questions relating to tuberculosis (TB) ...blood transcriptomics has repeatedly been applied to define correlates of ...
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