Associations with differentially expressed gene pathways
Searching for differentially expressed gene combinations
... finding gene pairs with joint differential ...of gene pairs is in the millions, there is a need for a quickly computable ...uncover gene pairs that show promising scatterplot patterns and tend to ...
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Aberrantly methylated-differentially expressed genes and pathways in colorectal cancer
... methylated-differentially expressed genes and pathways in CRC by joint bioinformatics analysis of both gene expression and gene methylation microarrays, which may contribute to the ...
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Original Article Personalized identification of differentially expressed pathways in colon cancer
... Differential co-expression analysis is emerging as a valid complement to conventional differen- tial gene expression research in diseases. The ASCC3, PTGS2, CPT2, NAT2, CXCL2, CXCL1, UGT2B17, SLC35D1 and UGT2B15. ...
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Identification of differentially expressed genes in pathways of cerebral neurotransmission of anovulatory mice.
... neurolipidosis differential murine brain before and after reversal of anovulation. The present study showed changes in gene expression of molecular markers in brain tissue of animals for brain neurotransmission ...
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Improved survival among colon cancer patients with increased differentially expressed pathways
... downstream gene regulation, through both direct and indirect gene ...mutated gene in colon cancer [31], was significantly up-regulated in our data, and genes for which TP53 was an upstream regulator ...
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Identification of differentially expressed genes and signaling pathways in ovarian cancer by integrated bioinformatics analysis
... data, gene expression microarrays have been widely used to collect gene chip expression profiling data and to study gene expres- sion profiles in many human ...of gene expression microarray ...
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Identification of aberrantly methylated differentially expressed genes targeted by differentially expressed miRNA in osteosarcoma
... tumor tissues across a range of cancers, indicating that JAK/ SAT activation correlates with worse prognosis. We next established a clue GO network of the hypermethylated genes and these pathways, and observed ...
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A novel principal component analysis method for identifying differentially expressed gene signatures
... differential gene contribution. This PC was selected, as supported by Fig. 3, because it separated the two groups in the score plot quite well. The plot on the right in Fig. 3 gives the differential contribution ...
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Orthology-Based Multilevel Modeling of Differentially Expressed Mouse and Human Gene Pairs
... • signal intensity is proportional to error magnitude, • the log transformation symmetrises data, • the log transformation reduces the effect of outliers. In a personal email correspondence with Terry Speed in October, ...
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Differentially expressed gene transcripts in wheat and barley leaves upon leaf spot infection
... Abstract: A cDNA library was created on the basis of transcripts that were generated during the process of infection of wheat and barley with Pyrenophora tritici-repentis or P. teres. Due to the time course of infection ...
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Two members of the Fxr gene family, Fmr1 and Fxr1, are differentially expressed in Xenopus tropicalis
... In conclusion, we report here the characterization of Fmrp and Fxr1p in Xenopus tropicalis. Both proteins share the major func- tional domains with their murine and human orthologues and show a differential expression ...
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A gene differentially expressed in the kidney of the spontaneously hypertensive rat cosegregates with increased blood pressure
... identified gene of yet unknown function, termed SA, which is differentially expressed in the kidney of the spontaneously hypertensive rat, cosegregates with an increase in blood pressure in F2 rats ...
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Analysis of differentially expressed genes and molecular pathways in familial hypercholesterolemia involved in atherosclerosis: A systematic and bioinformatics approach
... REACTOME pathways. The connectivity of the pathways in the network described by functional nodes and edges that are shared between the DEGs with a kappa score of ...significant pathways (p-value ≤ ...
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Identification of Differentially Expressed Genes in HPV AssociatedCancers Using Gene Expression, Tissue,and MicroRNA Microarrays
... cellular gene in the development of HPV-associated ...of differentially gene expression in cervical tumor tissues by microarray, qRT-PCR or tissue-array ...cellular pathways affected by the ...
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Members of the Hyposoter didymator Ichnovirus repeat element gene family are differentially expressed in Spodoptera frugiperda
... and 15% hybridization signal, respectively. A third hybridization signal with a high molecular weight seg- ment, representing 7% of the total signal intensity, was also detected in Southern-blot (Figure 1). Taken ...
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Differentially expressed gene detection with covariate selection under small sample size genomic setting
... the pathways are related to brain disease which indicates that the DE genes detected is important referring to MDD disease even though each of the 8 studies has very weak ...
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Identification and Characterization of a Differentially Expressed Gene (07E12) in the Infective Larvae of the Parasitic Nematode Ascaris suum.
... ly expressed during gametogenesis and throughout development in the L2 ...siRNA pathways are dominant in the germline, whereas miRNA pathways prevail in embryo and larval ...
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Pomelo II: Finding differentially expressed genes
... Note that a particular two-class comparison in a, say, three-class analysis is not necessarily identical to con- ducting just a two-class comparison with a t-test: in linear models, we use all available data to estimate ...
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Statistical methods for ranking differentially expressed genes
... Abstract In the analysis of microarray data the identification of differential expression is paramount. Here I outline a method for finding an optimal test statistic with which to rank genes with respect to differential ...
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Identification of Differentially Expressed Genes in Scrapie-Infected Mouse Brains by Using Global Gene Expression Technology
... the differentially regulated genes that correlate with the development of prion diseases for a better understanding of their pathological ...global gene expression profiles from brains of mice who were ...
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