DNA-based analysis using the pmoA microarray
Real-time DNA microarray analysis
... of DNA microarrays, we need to better understand the relationship between the target analytes in the sample and the number of captured analytes in the capturing ...of analysis in microarrays, i.e. analyte ...
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DNA microarray integromics analysis platform
... analysed using the TargetScore package and the appropriate sequence-based information (including the context score and PCT) for each selected miRNA ...simultaneously using expression fold-change and ...
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Global Analysis of Herpes Simplex Virus Type 1 Transcription Using an Oligonucleotide-Based DNA Microarray
... of using defined oligonucleotide probes for the HSV-1 DNA ...a microarray provides an additional convenient addition to the available tools for the investigation of HSV ...a microarray with ...
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Artificial neural network analysis of DNA microarray-based prostate cancer recurrence
... Tables IV and V list the top 64 genes selected by RFE for the 64-gene models for dimensional reduction with k-means cluster analysis and PCA, respectively. It was interesting to learn that the 64 genes listed were ...
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Analysis of Microarray based Biological Pathway using Data Mining
... data analysis methods has led to the emergence and fast growth of a promising new field: ...Pathway-level analysis can provide important insights for making biological inferences and hypothesis from genetic ...
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DNA Microarray Based Typing of Streptococcus agalactiae Isolates
... MLST using pro- tocols and software provided at ...http://pubmlst.org/sagalactiae/. Microarray design and protocol optimization. The microarray cov- ered typing markers, such as capsule- and ...
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DNA Microarray Based PCR Ribotyping of Clostridium difficile
... proach using single-stranded PCR should be applied. Single- stranded DNA prevents competition between the probe and antisense strand and increases the probability of the single- stranded amplicon binding to ...
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Analysis-driven lossy compression of DNA microarray images
... metrics based on the quadratic pixel-wise error like the PSNR (or MSE) are not adequate in this ...metrics based on the human visual system such as SSIM [32] and HDR-VDP 2 [33] may not be useful, since ...
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Analysis on Microarray Data and DNA Regulatory Elements Prediction
... derived based on a set of target sequences only, the GA-derived matrix is trained using both target and non-target ...that using GA-derived matrix gave fewer sequences with either extremely high or ...
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DNA Microarray Data Analysis: A New Survey on Biclustering
... By adopting the Iterative Row and Column Clustering Combination Approach (IRCCC) approach, we apply clustering algorithms on both rows and columns separately and then combine the results to obtain biclusters [56]. Table ...
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CLASSIFICATION OF ACUTE LEUKEMIA BASED ON DNA MICROARRAY GENE EXPRESSIONS USING PARTIAL LEAST SQUARES
... Abstract: Analysis of microarray data, when presented with raw gene expression intensity data, often take two main steps when analyzing the ...leukemia microarray data set of Golub et ...components ...
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An Improved Clustering-based Approach for DNA Microarray Image Segmentation
... 1230c1G/R microarray image. It is clear that using intensity and distance from the center as the features can reveal the true foreground for these ...benchmark microarray images obtained from the ...
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A visual analytics framework for cluster analysis of DNA microarray data
... Cluster analysis of DNA microarray data is an important but difficult task in knowledge discovery pro- ...to analysis of data for gene expression, but none of them is able to deal with an ...
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DNA Microarray Data Analysis: A Novel Biclustering Algorithm Approach
... in DNA microarray data analysis, collaborative filtering, market research, information retrieval, text mining, electoral trends, exchange analysis, and so ...with DNA microarray ...
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Use of DNA microarray analysis in diagnosis of bacterial and fungal endophthalmitis
... the microarray analysis were both ...the microarray data are reliable for identification of microorganisms from VF in ...infections using our microar- ray showed discrepancies for some ...the ...
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Information visualization for DNA microarray data analysis: A critical review
... visualized using various visual ...the microarray data, data analysis is frequently focused on a visualization that reflects a conventional or famil- iar perspective to the viewer with additional ...
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Development of Oligonucleotide Microarray for High Throughput Dna Methylation Analysis
... tiling microarray to NimbleGen oligonucleotide microarray to study the impact of methylation on gene expression in human genome (Weber et ...analyzed using MeDIP combined with tiling ...
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The development of DNA microarray technology a
... in microarray analysis can be much larger and may be estimated as follows, in the case of peptide–MHC microarrays: analysis of MHC peptide–binding motifs [26] suggests that a core of nine amino acids ...
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Screening of deafness-causing DNA variants that are common in patients of European ancestry using a microarray-based approach
... oligonucleotide-array based chip approach for simultaneous analysis of nine mutations in five ...genes. Using this chip, rapid screening for specific variants at different genetic loci can be ...on ...
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Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray
... hybridization microarray was success- fully applied in the study of transcripts changes asso- ciated to papaya fruit, a commercially relevant crop from a non-model ...
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