DNase I hypersensitive sites
Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
... contrast, DNase I is a dou- ble stranded DNA-specific endonuclease that releases accessible chromatin by preferentially digesting nucle- osome-free genomic regions categorized as DNase I ...
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DNase I-hypersensitive sites are associated with both long terminal repeats and with the intragenic enhancer of integrated human immunodeficiency virus type 1.
... 12 DNase I-Hypersensitive Sites Are Associated with Both Long Terminal Repeats and with the Intragenic Enhancer of Integrated Human Immunodeficiency Virus Type 1 ERIC VERDIN Laboratory o[r] ...
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Transcriptional activation and DNase I hypersensitive sites are associated with selective expression of the gastrin releasing peptide gene
... four DNase I hypersensitive sites. These hypersensitive sites are absent in the two cell lines that do not express ...of DNase hypersensitive sites in the ...
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In Vivo Analysis of DNase I Hypersensitive Sites in the Human CFTR Gene
... Alterna- tively, the -20.5 kb DHS, which is present in pancreatic chromatin from the transgenic mice, might be involved in the low-level expression detected in the transgenic mouse pancr[r] ...
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Acceptor sites for retroviral integrations map near DNase I-hypersensitive sites in chromatin.
... Positions of unselected proviral integrations and DNase I-hypersensitive HS sitesa Total length of Position of HS Position of proviral DNA analyzed Locus sites kb integration kb kb dsi-3[r] ...
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Retrovirus integration and chromatin structure: Moloney murine leukemia proviral integration sites map near DNase I-hypersensitive sites.
... 336-343 0022-538X/87/020336-08$02.00/0 Copyright © 1987, American Society for Microbiology Retrovirus Integration and Chromatin Structure: Moloney Murine Leukemia Proviral Integration Si[r] ...
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Significance of DNase I-hypersensitive sites in the long terminal repeats of a Moloney murine leukemia virus vector.
... Several weak DNase I HS sites are present in the cellular sequences adjacent to the proviral integration sites of the infected cell lines IF-1 and IF-2, but not in the transfected cell l[r] ...
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Evolution of DNAase I Hypersensitive Sites in MHC Regulatory Regions of Primates
... gathered DNase I data from 136 human cells to characterize the regulatory landscape of the MHC region, including 4867 DNase I hypersensitive sites ...
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Methylation state and DNase I sensitivity of chromatin containing Moloney murine leukemia virus DNA in exogenously infected mouse cells.
... For the clone 80 integration lacking DNase I-hypersensitive sites, the methylation state and DNase I sensitivity of the adjacent cell DNA as well as in the host site without integrated p[r] ...
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Mutational analysis of the trans-activation-responsive region of the human immunodeficiency virus type I long terminal repeat.
... An analysis of the DNase I hypersensitivity profile of the HIV-I LTR in transfected cultures suggested the presence of at least two DNase I-hypersensitive sites, including one which exte[r] ...
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Transposable element derived DNaseI-hypersensitive sites in the human genome
... human DNAse I hyper- sensitive sites actually stem from TEs that serve important immune response functions in especially rapidly evolving ...HS sites as reported here is not ...HS sites ...
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Rapid genome-scale mapping of chromatin accessibility in tissue
... nuclease hypersensitive sites, we mapped DNase I accessible regions using nuclei puri- fied from fresh liver tissue (Figure 1A, left ...and DNase I accessible regions were ...
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Targeting Repeat Sequences with DNA Binding Small Molecules
... Quantitative DNase I Footprintillg Titratiolls To evaluate equilibrium binding affinity for the designed match site and discern the ability of the polyamide to bind match sites in a cont[r] ...
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DNA methylation in a Scottish family multiply affected by bipolar disorder and major depressive disorder
... GCOM1 forms part of the GRINL1A complex tran- scription unit, which comprises three groups of tran- scripts [41]. GCOM1 , which is a read-through transcript of MYZAP and POLR2M , shows similarity in amino acid sequence ...
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Distribution of DNase I-sensitive sites in simian virus 40 nucleoprotein complexes from disrupted virus particles.
... Alternatively, the nucleoprotein Downloaded from http://jvi.asm.org/ on November 10, 2019 by guest Nucleoprotein complexes core particles released from simian virus 40 SV40 virions were [r] ...
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Role of SP1-binding domains in in vivo transcriptional regulation of the human immunodeficiency virus type 1 long terminal repeat.
... DNase I protection with this partially purified HeLa extract revealed that mutations of both SPi-binding sites I and II resulted in slightly decreased protection over the enhancer, TATA,[r] ...
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Mobile element insertions causing mutations in the Drosophila suppressor of sable locus occur in DNase I hypersensitive subregions of 5'-transcribed nontranslated sequences.
... T h e locations of 16 mobile element insertions causing mutations at the Drosophila suppressor of sable [su(s)] locus were determined by restriction mapping and DNA seque[r] ...
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High resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP seq
... DNA-binding sites of transcription factors and other DNA-binding pro- teins on the genome is crucial to understanding their molecular interactions with ...vivo DNase I digestion of genomic DNA with ...
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Multiple protein-binding sites in an intracisternal A particle long terminal repeat.
... Three of the DNase I footprints include a sequence with homology to the simian virus 40 core enhancer and sequence motifs that closely resemble the binding sites for transcription factor[r] ...
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Transcription of the S gene in transgenic mice is associated with hypomethylation at specific sites and with DNase I sensitivity.
... 931 Downloaded from http://jvi.asm.org/ on November 10, 2019 by guest The methylation status of hepatitis B virus HBV DNA was investigated in different organs from two strains of transge[r] ...
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