Gene Expression Omnibus (GEO)
Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
... Weighted gene co-expression network analysis; OS: Overall survival; PFS: Progression-free survival; GEO: The Gene Expression Omnibus; DEGs: Different expression genes; TOM: ...
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Prognostic Significance of EIF4G1 in Patients with Pancreatic Ductal Adenocarcinoma
... used gene expression and clinical data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus ...significant gene in the three cohorts was ...
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Pathprinting: An integrative approach to understand the functional basis of disease
... [5], gene-based cross-species distance metrics have highlighted diseases that activate similar human and mouse pathways [6], and oncogenetic expression signatures have been prioritized by comparing human ...
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Down-regulation of microRNA-144-3p and its clinical value in non-small cell lung cancer: a comprehensive analysis based on microarray, miRNA-sequencing, and quantitative real-time PCR data
... miR-144-3p expression and clinical characteristics through data collected from Gene Expression Omnibus (GEO) microarrays, the relevant literature, The Cancer Genome Atlas (TCGA), and real-time ...
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Towards a Toxico-Chemogenomic Future: The Transformation of Public Gene Expression Data and Consideration for its Use.
... public gene expression resources that served as the primary focus of these efforts are the National Center for Biotechnology Information’s (NCBI) Gene Expression Omnibus (GEO) and the ...
204
Expression profile analysis identifies key genes as prognostic markers for metastasis of osteosarcoma
... the gene expression profiles from Gene Expression Omnibus (GEO) data- sets and determined the differentially expressed genes between metastatic OS samples and non-metastatic ...
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Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1
... in gene ranking, which lead to much higher reproducibility among inde- pendent studies ...of gene expression profiles and biomarkers or factors in LTNPs or understand the factors specifically ...
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Identifying differentially expressed genes from cross-site integrated data based on relative expression orderings
... Detecting differentially expressed genes (DEGs) between two phenotypes is a basic task in high-throughput biological studies. It is often hard to detect DEGs under the circumstances where the genes are differentially ...
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Prognostic and predictive values of CDK1 and MAD2L1 in lung adenocarcinoma
... integrated expression profiles of 668 lung cancer patients in five datasets from the Gene Expression Omnibus (GEO) and identified a panel of differentially expressed genes ...Elevated ...
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Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
... Method: We firstly identified differentially expressed genes (DEGs) between cardiomyopathy patients and controls with data from the gene expression omnibus (GEO) database. DEGs were associated with ...
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QTL/microarray approach using pathway information
... compared gene expression pro- files from 99 strains of inbred and recombinant inbred mice in their eQTL ...the gene expression omnibus (GEO) [31] under accession ...each gene, ...
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Enolase-1 serves as a biomarker of diagnosis and prognosis in hepatocellular carcinoma patients
... HCC expression profile data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, as well as HCC tissue microarray (TMA), and found that ENO1 mRNA and protein ...
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Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer
... and gene expression profiles) from the Gene Expression Omnibus ...the gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway (KEGG) enrichment analyses were ...
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Integrated whole genome microarray analysis and immunohistochemical assay identifies COL11A1, GJB2 and CTRL as predictive biomarkers for pancreatic cancer
... GEO: Gene Expression Omnibus; GSEA: Gene Set Enrichment Analysis; GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; PPI: protein– protein interaction; ROC: receiver ...
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CD4 T cell transcriptome analysis reveals aberrant regulation of STAT3 and Wnt signaling pathways in rheumatoid arthritis: evidence from a case–control study
... The gene expression array data were digitalized by using GeneChip Operating Soft- ware (version ...the Gene Expression Omnibus (GEO) of the National Center for Biotechnology Information ...
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Prognostic value of the combination of microsatellite instability and <em>BRAF</em> mutation in colorectal cancer
... Abbreviations: Msi, microsatellite instability; geO, gene expression Omnibus; TCga, The Cancer genome atlas; Msimut, microsatellite instability and BRAF mutation; Msiwt, microsatelli[r] ...
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DNA methylome profiling of human tissues identifies global and tissue specific methylation patterns
... of gene expression, we compared the detected methylation patterns with publicly available gene expression data (Gene Expression Omnibus (GEO) and ArrayExpress ...with ...
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Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma
... the expression profiles of circRNAs, miRNAs and mRNAs in OS from the Gene Expression Omnibus (GEO) database and the TARGET ...by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and ...
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Subtyping of microsatellite instability-high colorectal cancer
... GEO: Gene Expression Omnibus; GO: Gene Ontology; GSEA: Gene set enrichment analyses; HNSCC: Head and neck squamous cell carcinoma; HR: Hazard ratio; KEGG: Kyoto Encyclopedia of Genes ...
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The clock protein period 2 synchronizes mitotic expansion and decidual transformation of human endometrial stromal cells
... setting. Gene counts were estimated using HTSeq ...differential expression detection, i.e., DESeq and edgeR (32, 33). Expression was considered to be significantly different if the false discovery ...
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