GENE STRUCTURE AND PARTIAL PRIMARY PROTEIN SEQUENCE
Effect of gene structure changes on the rate of protein sequence evolution
... detectable sequence homology in the orthologous gene nm st be due to rapid sequence change following ...of sequence constraint in alternatively spliced genes to genes in the genome as a ...of ...
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Protein Sequence and Structure of Organic Acid
... A protein sequence homology search demonstrated similarity between the derived amino acid sequences of both cloned genes and the derived amino acid sequence of the gene encoding filament[r] ...
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Cross species protein sequence and gene structure prediction with fine tuned Webscipio 2 0 and Scipio
... versions of Scipio and WebScipio, with an improved reconstruction of very short exons and intron splice sites, especially for the case of cross-species searches. To this end, we introduced a version of the Needleman- ...
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Primary Structure of the Sialodacryoadenitis Virus Genome: Sequence of the Structural-Protein Region and Its Application for Differential Diagnosis
... the structure of the viral ...spike protein, a small membrane protein, a membrane-associated protein, and a nucleocapsid ...hemagglutinin-esterase gene capable of encoding a ...
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Protein sequence and structure alignments within one framework
... Results Classification in general Fragment classifications were attempted for pure sequence, pure structure and combined sequence+struc- ture and for fragment lengths up to k = 6. Larger values of k ...
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Dissecting the relationship between protein structure and sequence evolution
... of protein are more conserved than the amino acids on the ...of sequence variability in globular ...some partial associations between the local flexibility, packing density and sequence ...
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CiteSeerX — Predicting Protein-Protein Interactions From Primary Structure
... of protein interactions. Given a database of known protein–protein interaction pairs, a machine learning system is trained to recognize interac- tions based solely on primary structure ...
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Functional divergence after gene duplication and sequence structure relationship: a case study of G protein alpha subunits
... ancestral sequence reconstruction is a powerful technique for linking sequence to ...ancestral sequence inference, which can be used to infer the trends of functional ...ancestral sequence ...
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Anatomy of the herpes simplex virus 1 strain F glycoprotein B gene: primary sequence and predicted protein structure of the wild type and of monoclonal antibody-resistant mutants.
... In this paper we report the nucleotide sequence and predicted amino acid sequence of glycoprotein B of herpes simplex virus 1 strain F and the amino acid substitutions in the domains of [r] ...
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Using evolutionary covariance to infer protein sequence-structure relationships
... a protein can be traced back to a communication of Iacopo ...word protein itself is derived from the Greek adjective "πρωεείοδ", meaning primary or ...first structure of a ...
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Rotavirus YM gene 4: analysis of its deduced amino acid sequence and prediction of the secondary structure of the VP4 protein.
... Rotavirus YM Gene 4: Analysis of Its Deduced Amino Acid Sequence and Prediction of the Secondary Structure of.. the VP4 Protein.[r] ...
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Protein structure protection commits gene expression patterns
... the protein structures were unavailable from the PDB, we generated atomic coordinates through homology threading adopting the Pfam homolog as template and using the program Modeller ...comparative protein ...
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Protein Primary Structure of the Vaccinia Virion at Increased Resolution
... to protein abundance in the virion preparation, with higher abundance allowing the detection of more weakly ionizing modified peptides or sites with lower ...structural protein P4b had one of the highest ...
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Identification of ATP binding residues of a protein from its primary sequence
... a protein First we analyzed ATP interacting residues and its neighbors, and found that there is a significant difference in interacting and non- interacting ...a protein from its primary ...
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Direct Identification of Mycobacteria in Primary Liquid Detection Media by Partial Sequencing of the 65 Kilodalton Heat Shock Protein Gene
... PLDM submitted during this study contained 656 isolates that spanned 37 Mycobacterium species or taxonomic groups and 5 unique Mycobacterium species (as determined by partial 16S rRNA gene sequencing), as ...
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Sequence analysis of the polymerase 1 gene and the secondary structure prediction of polymerase 1 protein of human influenza virus A/WSN/33.
... The nucleotide sequence of polymerase 1 (P1) gene of a human influenza virus (A/WSN/33) has been determined by using cDNA clones, except for the last 83.. nucleotides, which were obtaine[r] ...
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Protein function prediction by integrating sequence, structure and binding affinity information
... the gene and hence are expected to have a much greater impact on molecular function than single nucleotide ...amino-acid sequence C-terminal to the INDEL site, or premature termination of ...amino-acid ...
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Quantifying the Relations between Protein Sequence, Structure and Function through Traditional and
... the Gene Ontology Project (GO, ...all protein func- tions in all organisms within the same framework remains quite a challenge because of the Figure ...
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Structure and expression of the chicken bone morphogenetic protein-2 gene
... recognition sequence, such as ...generating sequence information close to the primer, 1 pi of the Mn^^ buffer provided in the Sequenase kit was added to the labelling ...
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Effects of genetic variants in the TSPO gene on protein structure and stability
... translocator protein (TSPO) is an evolutionary conserved cholesterol binding protein localized in the outer mitochondrial ...TSPO gene affects binding of several high affinity TSPO ...TSPO ...
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