genomic sequence
Utilization of genomic sequence information to develop malaria vaccines
... The genomic sequence of P. falciparum was completed and published in October 2002 (Gardner et al., 2002). The P. falciparum proteome represented by stage-specific sporozoites, merozoites, trophozoites and ...
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Genomic sequence and embryonic expression of the zebrafish homeobox gene hox 3 4
... Int J [)t"" Riol '7 263 272 (199 1) 263 Original Arlie/" Genomic sequence and embryonic expression of the zebrafish homeobox gene hox 3 4 JOHANNA U ERICSON", STEFAN KRAUSS' and ANDERS FJOSE3 IOepartme[.] ...
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The complete genomic sequence of an in vivo low replicating BLV strain
... Cows 38 and 41 were members of a Holstein dairy herd in TandilBalcarce, Argentina that was routinely monitored over a many year period for BLV infection using serologic assays for anti BLV antibodies and PCR assays of ...
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Analysis of Genomic Sequence Using DSP Techniques in LABVIEW
... of genomic sequence , LabVIEW and digital signal processing ...DNA sequence is compared with the standard DNA sequence ...A genomic sequence is accessed from the standard ...
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Complete Genomic Sequence of Border Disease Virus, a Pestivirus from Sheep
... the genomic sequence of BVDV-1 strain SD-1 [16]); the latter assumption applies to certain cytopathogenic BVDV-1 strains (25, ...polyprotein sequence with respective sequences of other pestiviruses ...
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High quality draft genomic sequence of Arenimonas donghaensis DSM 18148T
... The whole-genome sequence of A. donghaensis DSM 18148 T was determined using the Illumina Hiseq2000 [9] with the Paired-End library strategy (300 bp insert size) at Shanghai Majorbio Bio-pharm Technology Co., Ltd. ...
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Signal processing methods for genomic sequence analysis
... A common strategy of many general purpose ncRNA gene finders–such as QRNA [88], ddbRNA [21], MSARI [18], and RNAz [119]–can be summarized as follows [71]. They first look for regions in genome sequences that are ...
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High quality draft genomic sequence of Flavihumibacter solisilvae 3-3T
... To the best of our knowledge, the genomic informa- tion of Flavihumibacter members still remains unknown. In this study, we present the draft genome information of F. solisilvae 3-3 T . A polyphasic taxonomic ...
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Comparative vertebrate genomic sequence analysis studies based on Fugu rubripes
... human genomic sequences indicates the presence of SPAF, FGF2, NUDT4 and a Centrin gene in both the mouse and human FGF2 genomic ...homologues: genomic library screening by hybridisation, ...
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Epidermodysplasia verruciformis-associated human papillomavirus 8: genomic sequence and comparative analysis.
... HPV8 stands out by several unique features: i the considerably reduced size of the noncoding region 397 base pairs, with a seemingly low potential for forming complex secondary structure[r] ...
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Draft genomic sequence of Nereida ignava CECT 5292T, a marine bacterium of the family Rhodobacteraceae
... Fig. 2 Phylogenetic tree highlighting the position of N. ignava 2SM4 T (bold) relative to other strains of the Roseobacter group. SSU rRNA gene sequences were aligned with version 121 of the ‘ All-Species Living Tree ’ ...
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Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny
... 5. Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, ...
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Draft genomic sequence of a selenite-reducing bacterium, Paenirhodobacter enshiensis DW2-9T
... All original sequence data can be found at the NCBI Sequence Read Archive [20]. The following steps were performed for removing low quality reads: (1) removed the adapter in the reads, (2) cut the 5 ’ end ...
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18S and ITS1 Genomic Sequence Variations in Rotylenchulus reniformis Isolates from Alabama
... of rDNA (type I and II) and 8% of nucleotides distinguished the variants (Carranza et al., 1996). Within the near full 18S rDNA of an individual RN, sequence variants (RN_VAR1 and RN_VAR2) exist, and these can be ...
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High Performance Parallel and Distributed Genomic Sequence Search
... Genetic Sequence Databases: One of the major issues with se- quence searching is the structure of the sequence database ...query sequence needs to be compared to every sequence in the database ...
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Computational approaches to interpreting genomic sequence variation
... The number of variants identified in the genome has grown dramatically over the past several years, and this rich dataset has both inspired and challenged efforts to use computational techniques to functionally annotate ...
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Molecular evolution of herpesviruses: genomic and protein sequence comparisons.
... We propose a measure of dinucleotide distance between two sequences f and g e.g., sequences from different organisms or from different regions of a genomic sequence, which controls for d[r] ...
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A PCR-based method for isolation of genomic DNA flanking a known DNA sequence
... isolate genomic sequences that lie adjacent to known DNA ...the genomic DNA, and enrichment for a particular genomic sequence can be achieved by the use of suitable restriction ...
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Mutagenesis-Induced, Large Fitness Variations with an Invariant Arenavirus Consensus Genomic Nucleotide Sequence
... viruses were observed. Although some differences were seen relative to the previously published LCMV ARM 53b se- quence (73–76), our sequence is in good agreement with the LCMV genomic sequence ...
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Improving the Sequence Ontology terminology for genomic variant annotation
... of sequence variation is complicated because reference genome annotations are ...multiple genomic features. Capturing the effect of a sequence alter- ation on the genomic features with which ...
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