motif discovery
Regulatory motif discovery using a population clustering evolutionary algorithm
... of motif discovery techniques [14], [21], [26], [31], [34], ...a motif model by statistical analysis of the sequence ...continuous motif models such as position frequency ...in motif ...
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RNA motif discovery: a computational overview
... Genomic studies have greatly expanded our knowledge of structural non-coding RNAs (ncRNAs). These RNAs fold into characteristic secondary structures and perform specific-structure dependent biological functions. Hence ...
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Biological Motif Discovery Algorithm based on Mining Tree Structure
... of motif discovery algorithm have been propose and implemented, each algorithm have different proprieties of others, some focus to improve the data structure that represent biochemical molecular, other use ...
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Gapped Motif Discovery with Multi Objective Genetic Algorithm
... Motif discovery is one of the fundamental problems that have important applications in identify- ing drug targets and regulatory ...a motif finding algorithm based on a multi-objective genetic ...
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The SLiMDisc server: short, linear motif discovery in proteins
... for motif discovery in the LMD/DILIMOT (4,5) and Short, Linear Motif Discovery (SLiMDisc) methods (6), which incorpo- rate both masking and evolutionary filtering to return overrepresented ...
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Development of an Efficient Hybrid Method for Motif Discovery in DNA Sequences
... of motif discovery can be defined as the searching of the motifs that meet the predefined format and ...priori. Motif discovery is a search ...
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A survey of motif discovery methods in an integrated framework
... As motif discovery methods can be very complex, with many possible differences, several authors have proposed frameworks for classifying motif discovery ...categorize motif ...
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NemoMap: Improved Motif-centric Network Motif Discovery Algorithm
... (Motif Discovery Algorithm) [21] im- proves upon the former by the introduction of a query graph hierarchy expansion treeas illustrated in Figure ...
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A Combined Motif Discovery Method
... Motif discovery by computer programs, however, became feasible as the publicly available biosequences databases grow in site and high performance computers become cheaply ...of motif discovery ...
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GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge
... for motif discovery make use of ortho- logous conservation to assess wether a particular DNA site is conserved across related organisms, and thus more likely to be ...sampler-based motif ...
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Bayesian model based approaches in the analysis of chromatin structure and motif discovery
... come only by the raw numbers of unbound sequences considered, along with the bound sequences, but the weights in itself do not emerge as an important factor because of the way the scores are built. The construction of a ...
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PairMotif+: A Fast and Effective Algorithm for De Novo Motif Discovery in DNA sequences
... of motif instances, we set q as 0 when the number of input sequences is small (≤ ...predicted motif repre- sents the part overlapped with the published ...of motif conservation measured by relative ...
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DNA Sequence Motif Discovery Using Evolutionary Multi Objective Differential Evolution Algorithm
... sequence alignment of different DNA sequences. The fitness value for an individual is evaluated by optimizing three different objectives – motif length, sequence similarity measure and support (number of sequences ...
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Spatial motif discovery in papain-like cysteine protease family
... that the local structure is perturbed [40]. 1pxv is the PCP-like protease Staphopain complexed with its inhibitor Staphostain. The inhibitor directly contacts with the active region and changes the structure ...
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A Novel Approaches for Motif Discovery using Data Mining Algorithm
... The motif result has been stored on image ...datasets. Motif discover methodology is a very huge challenging process in computational ...in motif level and analytically calculated single motif ...
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Analysis of computational approaches for motif discovery
... the motif-searching problem is a classification problem: all the words of a certain length appearing in the sequences should be partitioned into two classes: the binding sites, and all the ...
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Motif discovery in infant and adult directed speech
... We had stated several predictions based on pre- vious work. We had no clear expectation regard- ing recall, since the two factors that might affect it, repetition and burstiness, seemed to favour dif- ferent registers. ...
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Online Full Text
... the motif is used to scan the input sequences in search of subsequences similar to ...putative motif sites, akin to what would be provided by the positional ...a motif discovery ...a ...
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Online Full Text
... popular motif discovery tools by means of performance, length of motifs and/or some other ...for Motif Elicitation (MEME) system [2]-[4],[9], proposed a topdown mining method called as ToMMS, which ...
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Online Full Text
... bilistic motif discovery depends on representing all the sub- sequences of the time series into a collision matrix using some kind of ...bilistic motif discovery is its robustness to noise and ...
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