multiple sequence
Multiple Sequence Alignments in Linguistics
... perform multiple sequence align- ments of X-SAMPA word transcriptions we modi- fied ALPHAMALIG slightly so it could work with the tokens that consist of more than one symbol, such as ["e], ["e:] and ...
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SVM-based Automatic Annotation of Multiple Sequence Alignments
... of Multiple Sequence Alignments, this study explores an approach to 1) automate and reproduce manual editing, and 2) enable efficient and scalable Automatic ...of multiple alignments ...for ...
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Assessing the efficiency of multiple sequence alignment programs
... In the largest BAliBASE datasets, the use of the multi- core capability of T-Coffee was indispensable in order to evaluate alignment accuracy because, when running in single-core mode, its computational time exceeded by ...
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Core column prediction for protein multiple sequence alignments
... In this paper, we develop for the first time a column coreness predictor for protein multiple sequence align- ments. Our approach to predicting coreness is similar in some respects to nearest-neighbor ...
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Instability in progressive multiple sequence alignment algorithms
... a multiple sequence alignment is a rou- tine step in the analysis of homologous genes or ...progressive multiple sequence alignement may come from the fact that “more similar” sequences are ...
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Heuristics for multiobjective multiple sequence alignment
... Multiple sequence alignment (MSA) is of central importance to bioinformatics. This technique is useful to compare new sequences with other genomic sequences, unveil- ing their shared information and their ...
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Prenominal Modifier Ordering via Multiple Sequence Alignment
... In this paper, we introduce a novel approach to prenominal modifier ordering adapted from multiple sequence alignment (MSA) techniques used in computational biology. MSA is generally applied to DNA, RNA, ...
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Bootstrapping Lexical Choice via Multiple Sequence Alignment
... An important component of any generation system is the mapping dictionary, a lexicon of elementary semantic expressions and cor- responding natural language realizations. Typically, labor-intensive knowledge-based ...
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Multiple sequence alignment with user-defined anchor points
... primary sequence level may be obscured by spurious random ...by sequence duplications ...and multiple alignments from pairwise local sequence similarities, so-called frag- ment alignments or ...
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Noisy: Identification of problematic columns in multiple sequence alignments
... Sequence conservation in real data often varies dramati- cally along multiple sequence alignments ranging from constant sites to sequence positions that have effectively been randomized. In ...
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Sequence embedding for fast construction of guide trees for multiple sequence alignment
... than sequence distances, and this allows us to rapidly generate a distance matrix δ (F(x), F(y)) from a set of embedded ...the sequence vectors can be clustered using an alternative clustering method such ...
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MSARC: Multiple sequence alignment by residue clustering
... Second, only sequences belonging to currently aligned subsets contribute to their pairwise alignment. Even if a guide-tree reflects correct phylogenetic relationships, these alignments may be inconsistent with remaining ...
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Cluster Analysis Method for Multiple Sequence Alignment
... 3.2 Pair wise Alignment A Pair wise sequence alignment methods are used to find the best-matching piecewise local or global alignments of two query sequences.. Pair wise alignments can o[r] ...
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A Tabu Search Approach to Multiple Sequence Alignment
... damaged [1]. The genetic information stored by DNA is transferred to RNA for protein synthesis. Protein synthesis is important because it accomplishes most of the functions of living cells such as catalyzing chemical ...
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14. D. Sivalingam, R. Rajendran and K. Anbarasan
... Pairwise sequence alignments were made with BLAST and multiple sequence alignments are made with ClustalW, and based on the sequence alignments, dendrograms were constructed using software ...
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Insights of Rv2921c (Ftsy) Gene of Mycobacterium tuberculosis H37Rv To Prove Its Significance by Computational Approach
... In the current circumstance, we can see that there no defensive and healing treatment to destroy tuberculosis totally aside from BCG. Past many years of research as of now demonstrates that BCG gives constrained ...
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DNA Sequence alignment using programme by algorithm
... often used for methods that do not require extreme precision (such as searching a database for sequences with high similarity to a query). The three primary methods of producing pairwise alignments are dot-matrix ...
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Studies on DNA barcoding of sacred plant - Ficus religiosa L.
... Pairwise sequence alignments were made with BLAST and multiple sequence alignments are made with ClustalW, and based on the sequence alignments, dentrograms were constructed using software ...
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19. Jiaping Yan, Xiangxiang Meng, Feng Xu and Jie Chang
... respectively. Multiple sequence alignment of CnPMK amino acid sequences with PMKs from other species showed high sequence similarity ...The multiple alignments analysis revealed that CnPMK ...
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Parmacogenomics based drug design for asthma
... Normally multiple sequence alignments are used together in combination with protein structure to highlight functional mutations and functionally important protein ...
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