Nucleosome occupancy
The Paf1 Complex Represses SER3 Transcription in Saccharomyces cerevisiae by Facilitating Intergenic Transcription-Dependent Nucleosome Occupancy of the SER3 Promoter
... pendent nucleosome occupancy at the SER3 promoter? One possibility is that Paf1 regulates the histone chaperones Spt6 and/or Spt16, which are required for the maintenance of nucleosomes over the SER3 ...
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Links between DNA methylation and nucleosome occupancy in the human genome
... and nucleosome occupancy at regulatory elements in an unbiased manner, we studied all transcription fac- tor binding sites (TFBSs) that are conserved in mammals and that contain CpG in their recognition ...
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Quantitative MNase seq accurately maps nucleosome occupancy levels
... and nucleosome positions and levels of occupancy are a common determinant of gene regulation ...fore, nucleosome occupancy and accessibility are im- portant aspects of chromatin organization, ...
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Diversity of Scaffold/Matrix Attachment Regions (S/MARs) in Arabidopsis is Revealed by Analysis of Sequence Characteristics, Nucleosome Occupancy, Epigenetic Marks, and Gene Expression.
... nucleosomal occupancy of these windows was then calculated as described ...nucleosomal occupancy of each window for each S/MAR cluster was calculated and the results were ...nucleosomal occupancy for ...
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The Effect of Synonymous Codon Usage on Nucleosome Positioning
... to nucleosome occupancy and, as a proxy, GC content. The nucleosome occupancy can be determined in a number of ...predicted nucleosome occupancy as is done by Tompitak et ...
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Nucleosome positioning in Arabidopsis
... it). Occupancy around the TSS has in the past couple of years been studied in a variety of non-plant eukaryotes, including yeast (Mavrich et ...+1 nucleosome the first nucleosome downstream of the ...
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Epigenetic Regulation of Polymerase II Transcription Initiation in Trypanosoma cruzi: Modulation of Nucleosome Abundance, Histone Modification, and Polymerase Occupancy by O-Linked Thymine DNA Glucosylation
... JBP1 dKO cells leads to increased Pol II transcription with no defects in termination (11). We concluded that base J specif- ically regulates chromatin structure at Pol II transcription ini- tiation sites. To investigate ...
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Comprehensive nucleosome mapping of the human genome in cancer progression
... for nucleosome distribution organizations in the early tumors that might indicate shared chromatin structural events in early LAC, we categorized nucleosome profiles surrounding each TSS in the ...on ...
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Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytes
... observed nucleosome pattern in HMRs outside of CGIs is due to their methylation sta- ...the nucleosome occupancy profiles of TS- HMRs, albeit with weaker phasing surrounding the HMR (Figure 2b, ...
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Gammaretroviral Integration into Nucleosomal Target DNA In Vivo
... total nucleosome occupancy at integration sites differed depending on the annotation method ...the nucleosome surface can be inferred relatively well, allowing, for example, the design of DNAs that ...
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Lantermann, Alexandra (2010): Comparison of Genome-Wide Nucleosome Positioning Mechanisms in Schizosaccharomyces pombe and Saccharomyces cerevisiae. Dissertation, LMU München: Fakultät für Biologie
... promoter nucleosome occupancy and gene expression in ...of nucleosome occupancy surrounding their TSS into six ...promoter nucleosome occupancy was calculated for the different ...
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Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii
... For the evaluation of this experiment we followed the normalization guidelines given above: (1) qPCR signals from precipitates generated with specific antibodies were much stronger than those obtained from precipi- tates ...
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Improving biodiversity monitoring by modeling relative abundance from "presence only" data
... A natural strategy would be to estimate the abundance of each species and over time. However, this is too costly and difficult to perform. Recent methodologies of MacKenzie et al. (200), MacKenzie et al. (2003), ...
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Angular analysis: a method for the quantification of space
... Whether or not real bodies choose this route is not an issue to the angular analysis of a space, which is merely concerned with the quantification of a space in terms of its layout. Indeed, it is certain that there are ...
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The Village of River Ranch: A Post Occupancy Evaluation of a Traditional Neighborhood Development in Lafayette, Louisiana
... In conducting my post-occupancy evaluation of River Ranch, I used a combination of formal and informal interviews, naturalistic observations, observations of behavior traces, and analysis of archival data to ...
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Spectrum Occupancy Estimation and Analysis
... The massive use of wireless services and devices to apply in mobile com- munications for public or private purposes is becoming very popular and is a clear example of how the actual society depends on the wireless ...
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Energy-aware Occupancy Scheduling
... towards occupancy-based ...zone occupancy. Occupancy-based control, on the other hand, uses MPC approach and optimises HVAC control based on the detected or forecast occupancy ...account ...
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Household-differentiated demand modelling for communities
... The proposed model builds on a developed occupancy model that has significant differentiation based on household size and type. The demand model links to this model and has a similar degree of differentiation for ...
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Home Automation System using IoT
... Occupancy-aware control system: it is possible to sense the occupancy of the home using smart meters and environmental sensors like CO2sensors, which can be integrated in[r] ...
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A methodology for creating building energy model occupancy schedules using personal location metadata
... of occupancy models: (1) building level (number of occupants in a building at a given time); (2) space level and occupied status (presence of occupants at a particular time); (3) space level and number of ...
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