Sequence Data
Comparing the power of family based association tests for sequence data with applications in the GAW18 simulated data
... the data, investigations of questions such as parent-of-origin effects and other applications that are imperfectly or not readily addressed in case-control association studies ...The data set for the ...
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Use of Whole Genome Sequence Data To Infer Baculovirus Phylogeny
... genome sequence data were evaluated using data from nine complete baculovirus ...first data set comprised the sequences of the 63 genes common to these ...three data sets yielded ...
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Sequence to Sequence Data Augmentation for Dialogue Language Understanding
... small data due to ...of data for us to train the ...training data is sampled with different random seeds between our work and theirs, these results are not directly ...as sequence chunking ...
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Using Sequence Data To Infer the Antigenicity of Influenza Virus
... shorten influenza variant detection time and increase influenza surveillance coverage, thus facilitating influenza vaccine strain se- lection. A few attempts at predicting influenza virus antigenic variants based on the ...
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Using matK sequence data to unravel the phylogeny of Casuarinaceae
... Casuarina and Allocasuarina are sister taxa, quite similar both in morphology and in matK sequence data. Since the divergence of Ceuthostoma and Casua- rina + Allocasuarina there has been a major radiation ...
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Real Time Analysis and Visualization of Pathogen Sequence Data
... pathogen sequence data, which are increasingly collected as part of rou- tine surveillance or clinical ...health, sequence data are used to reconstruct the evolution of pathogens, to ...
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Spatiotemporal Analysis of the Genetic Diversity of Seal Influenza A(H10N7) Virus, Northwestern Europe
... host. Sequence data for samples collected from 41 different seals from four different countries between April 2014 and January 2015 were obtained by Sanger sequencing and next-generation sequencing to ...
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Performance of the Celera Diagnostics ViroSeq HIV 1 Genotyping System for Sequence Based Analysis of Diverse Human Immunodeficiency Virus Type 1 Strains
... .gov/guidelines). Sequence-based HIV-1 genotyping assays that detect drug resistance mutations in HIV-1 protease and RT are the most widely used assays for drug resistance ...HIV Sequence Data Base ...
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De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
... useful sequence data, as well as the rate at which the new sequence data covered ...Our data were insufficient for systematically assessing library saturation; however, it was apparent ...
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Enhancing genome assemblies by integrating non sequence based data
... based data into an assembly gives this method robustness not found by simply map- ping the assembled contigs to a virtual genome ...paired-end data to override the physical map when encountering small ...
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Apollo: a sequence annotation editor
... Each data type can be individually assigned a shape and a color (Figure ...the data within a tier in a collapsed style, in which all features within a tier are collapsed into one line (Figure 3), or in an ...
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Unlabeled Data for Morphological Generation With Character Based Sequence to Sequence Models
... For each language, we further add randomly sampled words from the respective Wikipedia dumps. We exclude tokens that are not exclu- sively composed from characters of the language’s alphabet, e.g., digits, or do not ...
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Characterizing and measuring bias in sequence data
... We thank Lynne Aftuck, Daniel Aird, Aaron Berlin, Elizabeth Bevilacqua, James Bochicchio, Julio Diaz Caballero, Patrick Cahill, Mauricio Carneiro, Jean Chang, Kristen Connolly, Matt Coole, Toni Delorey, Mark DePristo, ...
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Mitochondrial DNA sequence variation in Finnish patients with matrilineal diabetes mellitus
... Non-neutral patterns have been found in human mtDNA indicating that slightly deleterious mutations may be present in the population [7]. According to the neutral theory of molecular evolution, variation at the molecular ...
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Sushi gets serious: the draft genome sequence of the pufferfish Fugu rubripes
... Preliminary sequence information from ...mammalian sequence to both of these genomes is unlikely to reveal more information than comparison to just ...
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Bidirectional Inference with the Easiest First Strategy for Tagging Sequence Data
... for sequence labeling problems such as POS tagging, named entity recognition and text chunk- ...ability sequence together with the corresponding decomposition structure in polynomial ...
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Molecular analysis of microflora associated with dentoalveolar abscesses
... PCR amplification of the 16S rRNA gene. PCR amplification of the 16S rRNA gene from dilutions of purified DNA was carried out by using a thermal reactor (Hybaid Ltd., Middlesex, England) and Taq polymerase (Boehringer ...
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Distance based phenotypic association analysis of DNA sequence data
... aggregates each genetic variant ’ s information to build a distance matrix. For this reason, once an appropriate distance matrix is assumed, the issues of multiple testing and sparseness of data become less ...
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Model Invertibility Regularization: Sequence Alignment With or Without Parallel Data
... Using our concave regularizer, MIR optimization (Eq. 4) neatly falls under the MAP-EM framework (Dempster et al., 1977) and inherits the convergence properties of the underlying algorithms. MAP- EM follows the same ...
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Formation of a Multiple Protein Complex on the Adenovirus Packaging Sequence by the IVa2 Protein
... packaging sequence func- tion in Ad assembly have concentrated on identifying factors that interact with the packaging ...aging sequence probes and nuclear extracts from Ad-infected cells implicate the ...
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