Sequence Databases
Fast and Efficient Hashing for Sequence Similarity Search using Substring Extraction in DNA Sequence Databases
... biological sequence databases, however search and retrieval of relevant information from these databases takes a lot of processing time, when performed conventionally as size of databases ...
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Compressing DNA sequence databases with coil
... DNA sequence databases based on edit-tree ...DNA sequence data from a central repository to many recipients, and also to reduce disk space requirements for archival storage of such ...
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Necessity of Quality Controlled 16S rRNA Gene Sequence Databases: Identifying Nontuberculous MycobacteriumSpecies
... gene sequence databases or alternative mo- lecular information, some results will often remain inconclu- ...that sequence databases be of the best quality to overcome potential problems due to ...
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Mining Sequential Patterns with Multiple Minimum Support for Large Sequence Databases
... In data mining, different rules may need to satisfy different minimum supports depending on what items are in the database.. Experiment results show that the technique is very effecti[r] ...
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Maintaining the integrity of human immunodeficiency virus sequence databases.
... this sequence set is the presence of inter-patient sample pairs with higher degrees of similarity than intra-patient pairs, when HXB2-like sequences are ex- ...entire sequence, while having a range of ...
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Using Genomic Databases for Sequence-Based Biological Discovery
... public sequence databases like GenBank need to be able to store data in a generalized fashion, they often do not contain more specialized types of information that would be of interest to spe- cific groups ...
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Performance Efficient DNA Sequence Detection on GPUUsing Parallel Pattern Matching Approach
... biological sequence databases increased, the demand for advanced and high performance computational method for comparing and searching biological sequences have also ...DNA sequence alignment [14], ...
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Discovery and Characterization of a Thermostable Esterase from an Oil Reservoir Metagenome
... comprehensive sequence databases and cloned fosmid libraries of metagenomes derived from an offshore oil reservoir on the Norwegian Continental Shelf were screened for enzyme candidates using both ...
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Genome Scale Comparison of Mycobacterium avium subsp paratuberculosis with Mycobacterium avium subsp avium Reveals Potential Diagnostic Sequences
... The genetic similarity between Mycobacterium avium subsp. paratuberculosis and other mycobacterial species has confounded the development of M. avium subsp. paratuberculosis-specific diagnostic reagents. Random shotgun ...
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Genome cartography through domain annotation
... available sequence databases with each pre- dicted gene ...encounters sequence-similar, homologous portions of genes embedded in otherwise sequence-dissimilar, non- homologous ...
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Mycobacterium Species Identification and Rifampin Resistance Testing with High Density DNA Probe Arrays
... two sequence databases: one for the species identification of mycobacteria (82 unique 16S rRNA sequences corresponding to 54 phenotypical species) and the other for detecting Mycobacterium tuberculosis ...
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MediPlEx a tool to combine in silico & experimental gene expression profiles of the model legume Medicago truncatula
... To yield novel insights into gene expression, it would be desirable to integrate different kinds of in silico and experimental expression data. In case of the model legume Medicago truncatula, the TRUNCATULIX data ...
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An Implementation of Web Personalization using Web Mining Techniques
... component databases, making it difficult to assimilate their semantics into the overall heterogeneous ...legacy databases as a result of the long history of information technology development (including the ...
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Graph Databases and DBMSs - Free Computer, Programming, Mathematics, Technical Books, Lecture Notes and Tutorials
... As proposed in graph database benchmark guidelines [4], the best tests to benchmark a graph database are: traversal (which includes the calculation of the shortest path), graph analysis, connected components, ...
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NOSQL Databases
... Abstract: Databases are needed to store data in a standard format and at a proper ...NoSql databases are useful for large sets of distributed data. NoSql databases are effective for big data ...
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A Brief Overview of a Few Popular and Important Protein Databases
... It contains manually annotated records and combined information extracted from scientific literature and bio- curator-evaluated computational analysis. For a particu- lar protein UniProtKB/Swiss-Prot gives all known ...
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Survey of Security Issues in Various Database Using Digital Watermarking Techniques
... Chaokun Wang et al., [11], proposed an Arnold transform based method on watermarking relational data. ATBaM substantially improves watermark security by using image scrambling technology which could confuse the well- ...
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C Gibas, P Jambeck Developing Bioinformatics Computer Skil pdf
... of sequence analysis; it lets us draw evolutionary connections between genes that are related in ...the sequence are scored using standard substitution scores (for example, a positive score for a match and ...
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Intercontinental Dispersal of HIV-1 Subtype B Associated with Transmission among Men Who Have Sex with Men in Japan
... FIG 2 Phylogenetic analysis of HIV-1 subtype B variants identified outside East Asia. Neighbor-joining phylogenies were estimated from nucleotide sequences of the 1.1-kb pro-RT region (HXB2, nucleotides 2253 to 3392) of ...
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A Comparison between Characteristics of NoSQL Databases and Traditional Databases
... NoSQL databases have the necessary qualities to be called databases, or they are rather data stores with limited capabilities compared to relational ...NoSQL databases in comparison to the ...
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