Simple sequence repeat (SSR)
The application of high resolution melting in the analysis of simple sequence repeat and single nucleotide polymorphism markers in a pea (Pisum sativum L ) population
... and simple sequence repeat (SSR) markers in pea (Pisum sativum ...domains. Sequence tagged site (STS) mark- ers produced specific products: Psat_EST_00189_01_1 (300 bp), Pis_GEN_18_2_1 (400 ...
6
Genetic profiling of sugarcane genotypes using Inter Simple Sequence Repeat (ISSR) markers
... or simple sequence repeat (SSR) marker amplified tandemely di, tri and tetra nucleotide repeats that are widely distributed on ...(inter simple sequence repeat) analysis which ...
8
Simple sequence repeat markers that identify Claviceps species and strains
... develop simple sequence repeat (SSRs) markers for rapid identification of ...from sequence data stored at the National Center for Biotechnology Information ...are simple to use, ...
13
Confirmation of Pearl Millet Napiergrass Hybrids Using EST Derived Simple Sequence Repeat (SSR) Markers
... Prospects for deploying perennial grasses that are currently considered leading candidates for dedicated energy crops over large acreages are debatable because of several limitations, including vegetative propagation or ...
9
Genetic Diversity Analysis of Maize Hybrids Through Morphological Traits and Simple Sequence Repeat Markers
... 20 simple sequence repeat (SSR) loci were used to study the morphological and genetic diversity among 20 maize hybrids selected from different countries, and to classify the hybrids into groups based ...
12
A Simple Sequence Repeat-Based Linkage Map of Barley
... new simple sequence repeat (SSR)-based markers for barley have been developed from a combination of database sequences and small insert genomic libraries enriched for a range of short simple ...
10
Assessment of Genetic Diversity in Contrasting Sugarcane Varieties Using Inter Simple Sequence Repeat (ISSR) Markers
... Assessment of Genetic Diversity in Contrasting Sugarcane Varieties Using Inter-Simple Sequence Repeat ISSR Markers Assessed by RAPD Analysis,” Genetic Resources and Crop Evolution, Vol..[r] ...
8
Genetic and phenotypic association of the carnauba palm tree evaluated by inter-simple sequence repeat and biometric traits
... ABSTRACT. The carnauba palm Copernicia prunifera is the third most important non-timber forest species in Brazil; it is mainly known for the production of carnauba wax. We examined intra- population genetic diversity and ...
9
Fingerprinting and genetic diversity evaluation of rice cultivars using Inter Simple Sequence Repeat marker
... Rice as one of the most important agricultural crops has a putative potential for ensuring food security and addressing poverty in the world. In the present study, in order to provide basic information to improve rice ...
11
ISOLATION AND OPTIMIZATION OF INTER-SIMPLE SEQUENCE REPEAT (ISSR) TECHNIQUE FOR PLEUROTUS SAJOR CAJU TOWARDS ENVIROMENTAL STUDY IN SUPPORT OF THE COUNTRY’S NUCLEAR POWER PROGRAMME
... Inter-Simple Sequence Repeat (ISSR) and primers screening on Pleurotus sajor caju mushroom strains from Nuclear Malaysia’s Sterifeed Mushrooms Collection ...
8
Analysis of the genetic diversity of Lonicera japonica Thumb. using inter-simple sequence repeat markers.
... inter-simple sequence repeat (ISSR) (Zietkiewicz et ...inexpensive, simple, and efficient DNA marker method that does not require prior knowledge of the DNA sequence or large amounts of ...
7
Characterization and compilation of polymorphic simple sequence repeat (SSR) markers of peanut from public database
... Information on publicly available peanut SSRs was col- lected by scanning scientific publications. Based on se- quence similarity search with legacy Arachis SSR primer sequences, redundant primer sequences were detected ...
7
Optimization of sequence alignment for simple sequence repeat regions
... Sequence alignment involves the identification of the correct location of INDELS that have happened since their divergence from a common precursor. The true alignment reflects the evolutionary relationships ...
9
Finding and extending ancient simple sequence repeat-derived regions in the human genome
... biased sequence near SSR loci and clustered similar loci (see ...SSR sequence degeneracy over time pos- sible; long dead SSR loci resemble the derived and most de- generate portions of active SSR loci that ...
12
Simple sequence repeat variation in the Daphnia pulex genome
... Multiple models have been developed to explain the pattern of SSRvariation, such as the stepwise mutation model (SMM) [19], and more recent models that focus on a balance between the rate and pattern of length var- ...
12
Molecular studies on intraspecific diversity and phylogenetic position of Coniothyrium minitans
... Consequently, to determine whether the different mor- phological types of C. minitans could be separated easily on a molecular basis, we used a simple sequence repeat (SSR)–PCR technique using the ...
11
Assessing Probability of Ancestry Using Simple Sequence Repeat Profiles: Applications to Maize Hybrids and Inbreds
... Elder, J. K., and E. M. Southern, 1987 Computer-aided analysis White, E., J. Hunter, C. Dubetz, R. Brost, A. Bratton et al., 2000 of one dimensional restriction fragment gels, pp. 165–172 in Microsatellite markers for ...
12
An Assessment of Genetic Relatedness between Soybean [Glycine max (L ) Merrill] Cultivars Using SSR Markers
... In this present investigation, simple sequence repeat (SSR) analysis was used to determine the genetic relatedness among 32 soybean (Glycine max (L.) Merr.) cultivars from NRC for soybean, Madhya ...
9
Genetic structure of Mount Huang honey bee (Apis cerana) populations: evidence from microsatellite polymorphism
... In this study, the genetic structure of seven eastern honey bees ( A. cerana ) populations from Mount Huang in China were analyzed by SSR (simple sequence repeat) markers.. Results: The [r] ...
6
Molecular characterisation in tomato (solanum lycopersicum L.) - A review
... (simple sequence repeat) primers and four lycopene gene specific primers in order to determine genetic identities, genetic diversity and genetic ...
6