Structure and sequence
PROFESS: a PROtein Function, Evolution, Structure and Sequence database
... † Present address: Thomas Triplet, Department of Computer Science, Concordia University, Montreal, Qc H3G-1M8, Canada. Submitted 2 December 2009; Revised 3 June 2010; Accepted 6 June 2010 ...
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Dissecting the relationship between protein structure and sequence evolution
... of sequence variability in globular ...and sequence variability can be also observed among globular ...in sequence evolution. The strength of sequence–structure correlations also appear ...
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Analysis of simple sequence repeat (SSR) structure and sequence within Epichloe endophyte genomes reveals impacts on gene structure and insights into ancestral hybridization events
... simple sequence repeat loci and the variation in repeat elements has been used to rapidly identify endophyte species and strains, however, little is known of how the structure of repeat elements changes ...
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Example Of Sequence Structure In Programming
... story sequence it provides the backbone or more complex additions valves are used for pressure control in stir and! Sequence example sequence example sequence ...of sequence example may ...
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Exploring the sequence–structure relationship for amyloid peptides
... iterative sequence exploration that developed Waltz ...secondary structure propensities, but in their native structures adopt a conformation dependent on their surrounding amino acid sequence and ...
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Prediction Of Antimicrobial Peptides Based On Sequence Alignment And Secondary Structure Sequence And Segment Sequence.pdf
... secondary structure sequence from the prediction of ...including sequence alignment stage and feature extraction process until classification stage is carried out in Perl programming language in UNIX ...
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Hidden Softmax Sequence Model for Dialogue Structure Analysis
... max model (RSM), for topic modeling based on restricted Boltzmann machine (RBM). The model focuses on the document-level topic anal- ysis, it cannot be applied for the structure analy- sis. We propose a hidden ...
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Protein sequence and structure alignments within one framework
... Results Classification in general Fragment classifications were attempted for pure sequence, pure structure and combined sequence+struc- ture and for fragment lengths up to k = 6. Larger values of k ...
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Assembly Sequence Based on Improved Community Structure Algorithm
... Where e i i denotes the number of edges that fall in the community i , and a i denotes the number of edges that link to the nodes in community i . If the edges in a network lie no better than randomly, the value of Q is ...
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Identification of microRNA precursors with new sequence structure features
... secondary structure of pre-miRNAs to achieve their ...hairpin structure is the most noticeable but not discriminative charac- teristic of pre-miRNAs, because a large amount of non- pre-miRNA sequences can ...
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Effect of gene structure changes on the rate of protein sequence evolution
... gene structure th a t occurred at two stages in the lifetime of this ...gene structure changes following gene duplication led to the separation of th e fused genes by ...protein sequence evolution at ...
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In Turkish: Sentence Structure and Possible Sentences According to the Sequence of Elements
... This number will be equal to the permutation we get when we exclude the elements at the beginning and at the end of the sentence. 3! =3.2.1=6 as is seen, by arranging 3 different sentence elements in 6 different ...
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SSMART: Sequence-structure motif identification for RNA-binding proteins
... Finding sequence motifs is not trivial due to the shortness of the binding motif and the large number of input sequences that can include many false ...secondary structure preferences into motif models adds ...
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An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets
... mosaic structure or recombination among nucleotide sequences usually rely on identifying a pattern or a signal that would be unlikely to appear under clonal ...third sequence (the child ...child ...
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Combining Sequence and Structure Information to Model Biological Systems Dynamics
... of sequence is tied to structural motions intrinsically accessible to ...the sequence evolution or correlated mutations go hand in hand with structure-encoded ...from structure stabilization ...
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Galaxy Structure as a Driver of the Star Formation Sequence Slope and Scatter
... galaxy structure and star formation to understand the observed bimodal distribution of galaxies across cosmic ...formation sequence directly re fl ects the bimodality of the two stellar populations: ...
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Using evolutionary covariance to infer protein sequence-structure relationships
... signaling pathways in B-cells has been extensively studied(Bradshaw, 2010; Mohamed et al., 2009; Woyach, Johnson, & Byrd, 2012). It is activated upon antigen binding to the cell surface B-cell receptor, by Src ...
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CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments
... involving structure-based comparison of Reston Ebolavirus sGP with the corresponding proteins from several other Ebolavirus species ...combining structure-based alignments can reveal structural (and ...
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An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment
... We want to show that our model yields on aver- age comparable or better alignments than other state- of-the-art programs that build upon more costly dy- namic programming algorithms. We do believe that this comparison is ...
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An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment
... We want to show that our model yields on aver- age comparable or better alignments than other state- of-the-art programs that build upon more costly dy- namic programming algorithms. We do believe that this comparison is ...
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