Temporal analysis of gene expression
The temporal and spatial analysis of single cell gene expression
... our gene expression model, how- ever, many different stochastic reaction networks can be approximated by sequences of conditionally independent birth-death reactions and a similar approach may be more ...
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Temporal Activation Profiles of Gene Sets for the Analysis of Gene Expression Time Series
... the gene set ...for gene set sizes below 1000 among all four ...differential gene expression in both ...differential expression in relation to the reference than the majority of the ...
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Heart morphogenesis gene regulatory networks revealed by temporal expression analysis
... appears to show a large number of interactions, with a few highly connected nodes and many nodes with a few connections, which are likely to represent regulators and their targets, respectively. However, this inspection ...
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Temporal dynamics and transcriptional control using single cell gene expression analysis
... the temporal dynamics of a single-cell transcriptional network of 45 transcription factors in THP-1 human myeloid monocytic leukemia cells undergoing differentiation to ...measure temporal regulation of ...
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TA-clustering: Cluster analysis of gene expression profiles through Temporal Abstractions
... of gene expression time series ...from gene expression ...corresponding temporal pattern, one of the main advantages of the proposed method is its ability to infer intuitive and ...
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STATISTICS AND GENE EXPRESSION ANALYSIS
... to gene expression analysis. Why do we measure gene expression? The most common experiment is comparative: we want to compare the mRNA levels of one or more genes in cells from ...
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A temporal switch model for estimating transcriptional activity in gene expression
... correlated gene ex- pression patterns will also have correlated promoter structure and regulation ...our analysis of switch-time similarity with promoter motif data we ask whether our ap- proach can shed ...
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A temporal precedence based clustering method for gene expression microarray data
... Comparison With Respect to Other Existing Methods In order to have a comparison of our proposed method with some existing methods, we use the synthetic datasets and the smaller Arabidopsis dataset of 85 genes discussed ...
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Analysis of gene expression in intracranial aneurysms
... Plus2.0 Gene Chip micro- arrays (Affymetrix, Santa Clara, CA) the biotinylated cRNA targets were then hybridized with the ...superficial temporal artery tis- sue (n = 16) were selected for further ...the ...
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Microarray-based gene expression profiling and DNA copy number variation analysis of temporal fossa arachnoid cysts
... CNV analysis was used to study chromosomal aberrations in a detailed manner; with the platform used in our study, more than 946,000 copy number probes span the ...
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Applying Gene Ontology to Microarray Gene Expression Data Analysis
... identify gene pairs with regulatory relations in microarray time-series ...the temporal axis, and to maximize the number of point-wise matches between two time ...of temporal patterns by DTW has ...
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The p95 Gene of Bombyx moriNuclear Polyhedrosis Virus: Temporal Expression and Functional Properties
... a gene, p95, of Bombyx mori nuclear polyhedrosis virus (BmNPV) that encompasses an open reading frame for a putative 95-kDa polypeptide ...blot analysis indicates that two mRNA species, ...p95 gene ...
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Temporal and Spatial Regulation of Gene Expression During Asexual Development of Neurospora crassa
... relative expression levels were classified accord- ing to their major annotation in the MIPS Functional Catalogue (FUNCAT; FUNCAT annotations obtained from ...http://www.yale.edu/townsend; gene list updated ...
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Gene Expression in Temporal Lobe Epilepsy is Consistent with Increased Release of Glutamate by Astrocytes
... Identity of Genes Expressed in MTLE Specimens One of the challenges in DNA microar- ray analyses is to find biological meaning in the lists of differentially expressed genes. To facilitate this process, several ...
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A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila.
... gap gene expression is a consequence of the rotational (spiral-shaped) geometry of the ...Eigenvalue analysis revealed that the mono-stable steady state of posterior nuclei is a spe- cial type of ...
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Gene Expression Analysis
... A scaling normalization method for differential expression analysis of rna-seq data.. Genome Biology, 11(3):R25, 2010.[r] ...
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Nucleotide Sequence and Temporal Expression of a Baculovirus Regulatory Gene
... To determine whether IE-1 trans-activated transcription of other viral genes in addition to 39K, we analyzed transient expression of several early genes of AcNPV. The plasmid pHindIII-Q[r] ...
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Relating perturbation magnitude to temporal gene expression in biological systems
... a gene to be included in the aggregate relative response, the gene must meet the following criteria: 1) a measured response in two of three replicates at each sampling event (five total), 2) the measured ...
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Temporal patterns of gene expression in the antenna of the adult Drosophila melanogaster.
... In fact, random events, such as the accumulation of molecular damage due to reactive oxygen species, is one of the presently favored mechanisms used to support the rate-of-livin[r] ...
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Gene Expression Analysis Annotation/Functional Analysis
... slen means Subject sequence length qstart means Start of alignment in query qend means End of alignment in query sstart means Start of alignment in subject send means End of alignment in[r] ...
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