The NRSE consensus sequence and genomic distribution
Mutagenesis-Induced, Large Fitness Variations with an Invariant Arenavirus Consensus Genomic Nucleotide Sequence
... Received 28 February 2005/Accepted 9 May 2005 Enhanced mutagenesis may result in RNA virus extinction, but the molecular events underlying this process are not well understood. Here we show that 5-fluorouracil ...
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Patterns of genomic distribution and sequence heterogeneity of a murine "retrovirus-like" multigene family.
... germ-line cells, and DNA prepared from a whole BALB/c mouse embryo were digested with EcoRI and analyzed by blot hybridization for the distribution of VL30-containing DNA fragments. (Fig[r] ...
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Identical Consensus Sequence and Conserved Genomic Polymorphism of Hepatitis E Virus during Controlled Interspecies Transmission
... viral quasispecies. Sn varies from 0 (no complexity) to 1 (maximum complexity). Detection of nonviable mutations. In order to have an estimate of the percentage of the nonviable HEV population, mutations creating ...
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Sequence, genomic distribution and DNA modification of a Mu1 element from non-mutator maize stocks.
... It is possible that the differential modification reflects different levels of inactivation, similar to that observed with the Spm elements (FEDOROFF et al. Factors condit[r] ...
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Mutagenic analysis of the coronavirus intergenic consensus sequence.
... pentanucleotide repeats at the 5'-end genomic leader se- quence and at the intergenic region are the same sequence, the precise leader-body fusion site on MHV mRNA has not been identifie[r] ...
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Signal processing methods for genomic sequence analysis
... The main difference beween profile-csHMMs and traditional profile-HMMs is as follows. Un- like profile-HMMs, profile-csHMMs have three different types of match states: single-emission match states, pairwise-emission ...
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High Performance Parallel and Distributed Genomic Sequence Search
... effective working set of each processor is reduced. Creating static per-database processor pools, however, is not flexible enough to handle the dynamic online query composition and will likely cause serious system ...
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Sequence-Level Population Simulations Over Large Genomic Regions
... unique sequence in the founding gen- eration of the ...known distribution (N euhauser 2007), and 10N and 12N generations suffice to ensure that the final generation will trace to a unique founder ...
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Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator
... the distribution of QTN effects is highly leptokurtic and can be reasonably well approximated by a gamma density (Hayes and Goddard 2001; Eyre-Walker and Keightley 2007; Caballero et ...
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Genomic distribution of H3K9me2 and DNA methylation in a maize genome
... Cytosine DNA methylation is a chromatin modification involved in many cellular processes including regulating gene expression and silencing repeat sequences and transposons. In plants, DNA methylation occurs in both ...
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High quality draft genomic sequence of Arenimonas donghaensis DSM 18148T
... use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were ...
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Complete Sequence and Genomic Analysis of Rhesus Cytomegalovirus
... DNA sequence of rhesus cytomegalovirus (RhCMV) strain 68-1 was determined with the whole-genome shotgun approach on virion ...RhCMV sequence along with the ability to grow RhCMV in vitro will facilitate the ...
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Computational approaches to interpreting genomic sequence variation
... Modern genomics technologies are yielding extensive catalogues of sequence variation. Substantial progress has been made in identifying some of the genetic contribution to disease, but for many of the ...
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Sequence and functional analyses of Haemophilusspp genomic islands
... these genomic islands acquired Tn3 and Tn10 a number of times, both independently and ...of sequence diversity between complete Tn3 sequences found in five genomic islands tested; and sec- ond, the ...
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The Genomic HyperBrowser: inferential genomics at the sequence level
... on genomic information of a sequential nature, that is, with specific base-pair locations on a genome, and thus not restricted to only ...of genomic tracks, possibly taking others into account through the ...
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from an Amplified Genomic Sequence of Streptomyces tendaet
... leading to secretion of the functional proteins. lividans seems to be a suitable host for the study of protein secretion. Compared with levels in the wild-type strain of S. tendae, expre[r] ...
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Complete Genome Sequence and Comparative Genomic Analysis of
... of genomic island MmGI-1 and heatmap of MmGI-1, anaerobic respiration genes and mycolic acid synthase- related gene loci among 56 ...the genomic sequences of 56 other ...
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Molecular evolution of herpesviruses: genomic and protein sequence comparisons.
... tional extremes (Table 2); (ii) with respect to distance order- ings within and between herpesvirus genomes (Tables 3 to 5; Fig. 1); (iii) with respect to partial orderings for the vecto[r] ...
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Sequence analysis and editing for bisulphite genomic sequencing projects
... or sequence electropherograms (without adaptive peak height adjustment), and then align them to a reference ...underlying sequence data surrounding the corresponding CpG dinucleotide, aligned to the ...
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Supervised learning for detection of duplicates in genomic sequence databases
... Results and Discussion Binary classification The binary classifiers have high performance, as shown in Table 5. Most have over 90% accuracy and all substantially outperform the Seq90 sequence similarity base- ...
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