[PDF] Top 20 A computational analysis of protein-DNA complex structures
Has 10000 "A computational analysis of protein-DNA complex structures" found on our website. Below are the top 20 most common "A computational analysis of protein-DNA complex structures".
A computational analysis of protein-DNA complex structures
... all protein families and therefore can be considered to uni versally recognise single ...analysed complex interactions; these extend the concept of increasing specificity through m ultiple bonds and ... See full document
314
Use of streptavidin bound to biotinylated DNA structures as model substrates for analysis of nucleoprotein complex disruption by helicases
... by protein-nucleic acid complexes requires higher affinity nucleoprotein complexes in order to facilitate detection of helicase ...double-stranded DNA [7], biotin can be positioned within single-stranded ... See full document
22
Computational analysis of protein sequence and structure
... distinct structures was not growing as fast as the PDB as a whole, it was suggested a few years ago th a t only a finite and relatively small number of fold topologies were encoded by the millions of ... See full document
199
Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates
... flap DNA substrates fluctuate rapidly between a Y-shaped con- former, with a structure relatively close to that observed in complex with Fen1, and an extended conformation (Figure ...these structures ... See full document
16
MultiBac: from protein complex structures to synthetic viral nanosystems
... assemble DNA into multi-expression cassettes for insertion into MultiBac baculoviral genomes but can be used in combin- ation according to the requirements of the ... See full document
10
Co expression and purification of the RadA recombinase with the RadB paralog from Haloferax volcanii yields heteromeric ring like structures
... binding buffer with increasing concentration of the RadA-RadB protein complex 0-8 μM did.. not result in protein-DNA complex formation on either 10% or 7% polyacrylamide..[r] ... See full document
10
Analysis and classification of protein structures
... ‘classification’ can be accurately applied, but it shares some of the characteristics of the other classifications and the DALI similarity scores could certainly be re-interpreted in a more explicit biological fashion if ... See full document
157
Computational Design of Self-Assembling Proteins and Protein-DNA Nanowires
... of protein-protein interactions is therefore crucial to advancements in both basic and applied research in the pharmaceutical, chemical, and biotechnology ...of structures deposited into the ... See full document
159
Crucial sequences within the Epstein-Barr virus TP1 promoter for EBNA2-mediated transactivation and interaction of EBNA2 with its responsive element.
... Analysis of the different DNA-protein complexes in methylation interference assays revealed that in complex I, the three consecutive guanines of the second 11-bp motif are predominantly [r] ... See full document
10
Computational Predictions of G Protein Coupled Receptor Structures and Binding Sites
... these structures were docked to the six protein structures from ...resulting protein- ligand complexes were scored by snap binding ...that protein conformation), along with a desire for ... See full document
122
Computational analysis of protein-carbohydrate interactions
... possible protein-sugar H-bonds, as reflected in th e fact th a t an increase in buried polar ASA does not always result in a larger num ber of H-bonds ...e protein form a hydrogen bond, directly or through ... See full document
170
Structural analysis of runx1 protein and its mutants in complex with runx3 promoter shows altered conformations
... between DNA and proteins by using Insight ...with DNA has shown that runt domain makes contacts in both the major and minor grooves of DNA using loops extending from one end of the barrel (Bravo, Li ... See full document
9
Structures of an apo and a binary complex of an evolved archeal b family DNA polymerase capable of synthesising highly cy dye labelled DNA
... Sequence analysis has identified six different families of DNA- dependent DNA polymerases (A, B, C, D, X and Y) [1], ...includes DNA polymerases from Thermus aquaticus, Bacillus ... See full document
13
An overview of the structures of protein DNA complexes
... of protein-DNA complex ...of protein-DNA complex geometries found in nature, but also underlines the importance of inter- actions between α helices and the major groove, which is ... See full document
37
Protein Interactions: the Multiple Solvent Crystal Structures of RNAse A and Analysis of the RalA and RalBP Complex
... of structures are reflected in the magnitude of the average RMSD per residue and in the range given by the low and high RMSD ...inhibitor-bound structures solved from crystals with symmetry of the C2 space ... See full document
325
p53 and RPA Are Sequestered in Viral Replication Centers in the Nuclei of Cells Infected with Human Cytomegalovirus
... the protein in HCMV-infected ...of DNA replication by dem- onstrating both incorporation of bromodeoxyuridine and localization of UL44 (the viral polymerase proces- sivity factor) into these ... See full document
7
Computational analysis of multi storey framed deck structures
... 8 In a paper by Majid and Williamson 'a method for the analysiS of general complete structures conSisting of a combination of one or more of three basic components of the structure, name[r] ... See full document
198
Transcription factors NFI and NFIII/oct-1 function independently, employing different mechanisms to enhance adenovirus DNA replication.
... By using a reconstituted system consisting of the purified viral proteins precursor terminal protein-DNA polymerase complex pTP-pol and DNA-binding protein, we show that NFIII/oct-1 or t[r] ... See full document
9
Transfection of Escherichia coli spheroplasts with a bacteriophage Mu DNA-protein complex.
... The DNA of adenoviruses has a 55,000-dalton protein covalently linked to the 5' ends 32, and adenovirus 5 DNA-protein complex is 100 times more infective than pronase-treated adenovirus [r] ... See full document
10
Cleavage of phi X174 single-stranded DNA by gene A protein and formation of a tight protein-DNA complex.
... Less than 0.5% and 0.1% of the total 32p label remained resistant to DNase I and micrococcal nuclease digestion, respectively, measured as trichloroacetic acid-precipitable The introduct[r] ... See full document
5
Related subjects