[PDF] Top 20 Analysis of a Uropathogenic Escherichia coli Clonal Group by Multilocus Sequence Typing
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Analysis of a Uropathogenic Escherichia coli Clonal Group by Multilocus Sequence Typing
... E. coli O157:H7 at reference laboratories, it is labor intensive and technically de- manding (8, 13, ...consistent typing method for investigating the clonal distribu- tion of uropathogenic ... See full document
5
Clonal Analysis of Staphylococcus epidermidis Isolates Carrying or Lacking Biofilm Mediating Genes by Multilocus Sequence Typing
... study, multilocus sequence typing (MLST) was employed for the clonal analysis of 118 ...single clonal complex. Within this complex one sequence type (ST27) was identified ... See full document
7
Multilocus Sequence Typing Analysis of Staphylococcus lugdunensis Implies a Clonal Population Structure
... coagulase-negative group. A multilocus sequence typing (MLST) scheme was developed to study the genetic rela- tionships and population structure of 87 ...DNA sequence analysis of ... See full document
7
Multilocus sequence typing (and phylogenetic analysis) of Campylobacter jejuni and Campylobacter coli strains isolated from clinical cases in Greece
... the multilocus sequence typing (MLST), which has already been developed and used for the molecular typing of Campylobacter ...the sequence identifica- tion of multiple genetic loci, ... See full document
10
Analysis of Escherichia coli O157 clinical isolates by multilocus sequence typing
... the sequence data were reliable and were accurately represented by these ...on clonal diversity and pathogenic properties of E. coli O157 strains, the present study extends our knowledge about the ... See full document
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Multilocus Sequence Typing of Candida tropicalis Shows the Presence of Different Clonal Clusters and Fluconazole Susceptibility Profiles in Sequential Isolates from Candidemia Patients in São Paulo, Brazil
... We thank Angelica Zaninelli Schreiber of Clinical Pathology Depart- ment, Faculty of Medical Sciences UNICAMP for providing the strains. We thank Gisele Duboc at Microbiology Laboratory, Division of Central Laboratory, ... See full document
10
Streptococcus mutans Clonal Variation Revealed by Multilocus Sequence Typing
... data set was 0.0931 when randomized data sets (1,000 trials) were used. This value is significantly greater than zero, which is the value expected for a population in linkage equilibrium. However, in populations in which ... See full document
10
The microbial ecology of Campylobacter jejuni in New Zealand within a spatial temporal framework : a thesis presented in partial fulfilment of requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Manawatu, New Zealand
... agriculture-associated clonal complexes, there were enough differences within their RAST classifications (Figure ...The multilocus sequence typing system uses an allelic profile based on loci ... See full document
258
Major Uropathogenic Escherichia coli Strain Isolated in the Northwest of England Identified by Multilocus Sequence Typing
... Multilocus sequence typing (MLST) is a DNA sequence- based method that has been used to study the population biology of pathogenic microorganisms and provides an under- standing of the ... See full document
5
Clonal Nature of Campylobacter fetus as Defined by Multilocus Sequence Typing
... Different typing methods divided ...a multilocus sequence typing (MLST) scheme for ...(AFLP) analysis. A total of 14 different sequence types (STs) were identified, and these ... See full document
11
Multilocus Sequence Typing of the Porcine and Human Gastric Pathogen Helicobacter suis
... MLST analysis, selected variability regions were amplified and ...Twenty-five sequence types (STs) were assigned based on unique allele combinations (Table ... See full document
7
Genetic diversity of Campylobacter jejuni and Campylobacter coli isolates from conventional broiler flocks and the impacts of sampling strategy and laboratory method
... Campylobacter coli isolates from commercial broiler farms was examined by multilocus sequence typing (MLST), with an assessment of the impact of the sample type and laboratory method on the ... See full document
10
Rapid Whole Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
... the analysis of sequencing ...the sequence data was ...identification, multilocus sequence typing, and phylogenetic relationships for Escherichia coli and Enterococcus ... See full document
9
Multiplex Strategy for Multilocus Sequence Typing, fla Typing, and Genetic Determination of Antimicrobial Resistance of Campylobacter jejuni and Campylobacter coli Isolates Collected in Switzerland
... optimized multilocus sequence typing (MLST) scheme with universal primer sets for ampli- fying and sequencing the seven target genes of Campylobacter jejuni and Campylobacter ...coli. ... See full document
12
Multilocus Sequence Typing of Escherichia coli O26:H11 Isolates Carrying stx in Canada Does Not Identify Genetic Diversity
... identical sequence type in all serotypes ...same sequence at the fliC locus as those strains serotyped as H11 (Table ...phylogenetic analysis between the six O26 multilocus sequence ... See full document
5
Comparison of Probe Hybridization Array Typing to Multilocus Sequence Typing for Pathogenic Escherichia coli
... E. coli isolates into different phylogenetic groups and compare the groups to classification using ...cluster analysis using Cluster ...E. coli collec- tion for which MLST data were ...cluster ... See full document
7
Multilocus sequence typing breathes life into a microbial metagenome
... population analysis. Using a nucleotide sequence-based genetic typing method, multilocus sequence typing, we were able for the first time to match clonal cultivable ... See full document
9
Phylogeny, sequence typing and virulence profile of uropathogenic Escherichia coli (UPEC) strains from Pakistan
... Phylogenetic group B2 strains are equipped with various VF genes relating to the extra-intestinal infec- ...phylogenetic group B2, carried range of virulence factors, including genes for adhesins ( fimH ... See full document
9
Complex Multilevel Control of Hemolysin Production by Uropathogenic Escherichia coli
... of sequence variation for individual genes in the hlyCABD operon. Sequence analysis showed that the hlyA gene divided into two well-supported groups, separating clade C strains from clade A/B strains ... See full document
17
In Vivo mRNA Profiling of Uropathogenic Escherichia coli from Diverse Phylogroups Reveals Common and Group Specific Gene Expression Profiles
... DNA sequence that is 99% identical from one element to ...expression analysis demonstrates that some Rhs elements are specifically ex- pressed in vivo in all 12 UPEC isolates belonging to the B1/A phy- ... See full document
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