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[PDF] Top 20 Biomedical Event Extraction using Abstract Meaning Representation

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Biomedical Event Extraction using Abstract Meaning Representation

Biomedical Event Extraction using Abstract Meaning Representation

... the event annotations in the training data and cast the event detection as subgraph matching ...Turk Event Extraction System (TEES) (Bj¨orne and Salakoski, 2013) (the event ... See full document

10

Parsing English into Abstract Meaning Representation Using Syntax Based Machine Translation

Parsing English into Abstract Meaning Representation Using Syntax Based Machine Translation

... Several other recent works have used a ma- chine translation approach to semantic parsing, but all have been applied to domain data that is much narrower and an order of magnitude smaller than that of AMR, primarily the ... See full document

12

A fast rule based approach for biomedical event extraction

A fast rule based approach for biomedical event extraction

... structured representation by applying the text preprocessing ...candidate event triggers. For each candidate event trigger, a key is generated to retrieve its corresponding ...the event ... See full document

5

Generation from Abstract Meaning Representation using Tree Transducers

Generation from Abstract Meaning Representation using Tree Transducers

... To our knowledge, our system is the first for gen- erating English from AMR. The approach is a sta- tistical natural language generation (NLG) system, trained discriminatively using sentences in the AMR bank ... See full document

9

Semantic Parsing for Biomedical Event Extraction

Semantic Parsing for Biomedical Event Extraction

... perform biomedical event extraction with the following ...Finally, biomedical events are extracted from the HVS parse results using a hybrid method based on rules and machine ... See full document

5

A Discriminative Graph Based Parser for the Abstract Meaning Representation

A Discriminative Graph Based Parser for the Abstract Meaning Representation

... into meaning representa- tions. Abstract Meaning Representation (AMR) (Banarescu et ...the meaning of a sentence is encoded as a rooted, directed, acyclic ...neo-Davidsonian ... See full document

11

Unsupervised Entity Linking with Abstract Meaning Representation

Unsupervised Entity Linking with Abstract Meaning Representation

... a representation of the relations among entities in ...the Abstract Mean- ing Representation (AMR) can better capture and represent the contexts of entity mentions for EL than previous ...AMR ... See full document

10

Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing

Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing

... to extraction of complex events from the BioNLP GENIA ...sentence representation where graph analyses such as dependency parses are fully included using our dependency path embeddings, and we demon- ... See full document

11

Scaling up Biomedical Event Extraction to the Entire PubMed

Scaling up Biomedical Event Extraction to the Entire PubMed

... tion using the tools of de Marneffe et ...for event extraction and other BioNLP tasks, many of which currently make extensive use of dependency syntactic ... See full document

9

Abstract Meaning Representation for Human Robot Dialogue

Abstract Meaning Representation for Human Robot Dialogue

... The representation captures who is doing what to whom like other semantic role labeling (SRL) schemes ...of meaning outside of seman- tic role information, such as fine-grained quan- tity and unit ... See full document

11

Semi-supervised method for biomedical event extraction

Semi-supervised method for biomedical event extraction

... The training set of GE task in BioNLP Shared Task 2011 (BioNLP 2011, hereafter) is considered as labeled data, while the PubMed abstracts (up to 2009) are unla- beled data. The entity pairs are obtained from labeled data ... See full document

10

New Resources and Perspectives for Biomedical Event Extraction

New Resources and Perspectives for Biomedical Event Extraction

... this representation involves a number of ...an event equiv- alence comparison to remove duplicate annotations from each ...alternate representation is thus an “off-the- page” summary of the unique ... See full document

9

Aligning English Strings with Abstract Meaning Representation Graphs

Aligning English Strings with Abstract Meaning Representation Graphs

... Banarescu et al. (2013) describe a semantics bank of English sentences paired with their logical meanings, written in Abstract Meaning Represen- tation (AMR). The designers of AMR leave open the question of ... See full document

5

Improving Event Detection with Abstract Meaning Representation

Improving Event Detection with Abstract Meaning Representation

... Abstract Meaning Representation (AMR) (Dorr et ...the meaning of a sen- tence is encoded as a rooted, directed, acyclic ...mantic representation from the sentences with the same ... See full document

5

A multiple distributed representation method based on neural network for biomedical event extraction

A multiple distributed representation method based on neural network for biomedical event extraction

... and event extrac- tion in Tables 4 and ...distributed representation, including depen- dent context which was formed by word embedding and task-based features on the deep learning methods, works well on ... See full document

8

Fast and Robust Joint Models for Biomedical Event Extraction

Fast and Robust Joint Models for Biomedical Event Extraction

... simplified representation of the problem in which certain features are harder to capture, employs local search without certificates of optimality, and further- more requires a 32-core cluster for quick train-test ... See full document

12

Generalizing Biomedical Event Extraction

Generalizing Biomedical Event Extraction

... based event detection com- ponents classify examples into one of the positive classes or as negatives, based on a feature vector representation of the ... See full document

9

Comparable Study of Event Extraction in Newswire and Biomedical Domains

Comparable Study of Event Extraction in Newswire and Biomedical Domains

... the event structure detector, we use only two labels (“EVENT” or “NOT-EVENT”), instead of the previously used composite labels, which consisted of the event type, together with the roles and ... See full document

10

Abstract Meaning Representation of Constructions: The More We Include, the Better the Representation

Abstract Meaning Representation of Constructions: The More We Include, the Better the Representation

... the representation to go beyond capturing the semantics of purely compositional language to better capture the se- mantics of constructions in which the meaning is more than the sum of its parts (lexical ... See full document

8

Augmenting Abstract Meaning Representation for Human Robot Dialogue

Augmenting Abstract Meaning Representation for Human Robot Dialogue

... semantic representation (see Sec- tion 7 for related ...structured representation, as well as ease of conversion of this broad coverage representation to the domain-specific representation ... See full document

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