[PDF] Top 20 A clustering method for repeat analysis in DNA sequences
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A clustering method for repeat analysis in DNA sequences
... these sequences separately, and than used our clustering method to determine the repetitive structure of each chro- ...5,000-7,000 repeat classes per chromosome, but only 20% of these contain ... See full document
11
Analysis on Clustering Method for HMM-Based Exon Controller of DNA Plasmodium falciparum for Performance Improvement
... One method that can be used to control the exon DNA is the method of Hidden Markov model (HMM) which has some of the parameters used are the number of states, the value of the transition state, state ... See full document
6
A Scoring Method for the Clustering of Nucleic Acid Sequences
... biology, clustering goes beyond a mere statistical tool for information ...sequence clustering, it aims at revealing the genetic information of participating ...Cluster analysis helps in the ... See full document
9
A Mutation of the Yeast Gene Encoding PCNA Destabilizes Both Microsatellite and Minisatellite DNA Sequences
... processive DNA synthesis by DNA polymerase d and ...8-bp repeat units) and minisatellite (20-bp repeat units) DNA ...in DNA mismatch repair. From our analysis of the ... See full document
9
Autoregressive Modeling and Feature Analysis of DNA Sequences
... search method can be used as an analytical tool to reveal additional information about the interrelations between di ff erent DNA ...this analysis could be used in knowledge or rule-based methods. Two ... See full document
16
A Centromeric Tandem Repeat Family Originating From a Part of Ty3/gypsy-Retroelement in Wheat and Its Relatives
... FISH analysis showing localization of the repetitive DNA sequences from ...genomic DNA and DIG-labeled pSc74, detected with streptavidin-Cy3 (red) and anti-digoxigenin-fluorescein (green), ... See full document
8
DNA Methylation in Placentas of Interspecies Mouse Hybrids
... promoter sequences driving placenta-specific expression of genes in proximity to the insertion site (Chang-Yeh et ...methylated DNA and then recruiting both the histone deacetylase and histone H3 methyla- ... See full document
6
Biochemical Analysis Of Yeast Pre-Replicative Complex Assembly
... vitro DNA replication ...a method to assemble pre-replicative complexes (pre-RCs) onto short repeat sequences of the origin A RSl, immobilised on ...origin sequences with an A element, ... See full document
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Nucleotide sequence analysis of the long terminal repeat of integrated bovine leukemia provirus DNA and of adjacent viral and host sequences.
... 615-620 0022-538X/84/020615-06$02.00/0 Copyright © 1984, American Society for Microbiology Nucleotide Sequence Analysis of the Long Terminal Repeat of Integrated Bovine Leukemia Provirus[r] ... See full document
6
A Parallel Clustering Method Study Based on MapReduce
... novel clustering method based on MapReduce is ...based clustering method. Firstly, IB theory based hierarchy clustering is used determine the center of each Map computation ...The ... See full document
8
Detection of human papillomaviruses in exfoliated cervicovaginal cells by in situ DNA hybridization analysis
... The sensitivity and specificity of the in situ DNA hybridization method in detecting HPV DNA sequences in cervicovaginal cells were also evaluated by comparing the in situ DNA hybridizat[r] ... See full document
6
Formation of Large Palindromic DNA by Homologous Recombination of Short Inverted Repeat Sequences in Saccharomyces cerevisiae
... blot analysis of Ura ⫹ and Ura ⫹ Leu ⫹ colonies from the plating of Rad ⫹ ATB996 to selective galactose ...genomic DNA from colo- nies isolated in minus-uracil medium was fractionated on a ...nomic ... See full document
11
DNA fingerprinting in forensics: past, present, future
... one DNA fingerprint profile is not known, leading to statistical errors due to possible linkage between ...the method required sub- stantial amounts of high molecular weight DNA [12] and thus ... See full document
10
Targeting DNA Repeat Sequences with Py Im Polyamides
... To achieve higher doses in a single dose experiment of toxicity, we exchanged PBS for saline in the vehicle, which allowed us to achieve concentrations of 5 mg/kg per 200 µl injection. On day 0, we injected male C57BL/6 ... See full document
143
Chromosome Structure and Human Immunodeficiency Virus Type 1 cDNA Integration: Centromeric Alphoid Repeats Are a Disfavored Target
... 3. Analysis of integration sites near several repeat families using a PCR-based ...PCR method used to analyze integration ...the DNA breaks indicated in part 2 (the gapped integration ... See full document
10
Characterization of a Maize Chromosome 4 Centromeric Sequence: Evidence for an Evolutionary Relationship With the B Chromosome Centromere
... meric sequences hybridize to all maize A chromosomes, BAC clone analysis: The Cent4 sequence was used as albeit to varying extents (Ananiev et ...B73 DNA quently, we refer to the repeat unit ... See full document
12
Active Clustering of Biological Sequences
... their analysis they use a property called weak deletion-stability, which is implied by the Ostrovsky et ...a clustering that is ε-close to the target) the runtime of their algorithm is n O(1/(c−1) 2 ) k ... See full document
23
Amplified Fragment Length Polymorphism Analysis: the State of an Art
... gel analysis software like GelCompar soft- ware (Applied Maths, Kortrijk, ...for analysis by the dedicated ABI GenoTyper ...cluster analysis, which is essential for epidemiological and phylogenetic ... See full document
9
Development of an Efficient Hybrid Method for Motif Discovery in DNA Sequences
... In this paper, we present a new hybrid algorithm based on particle swarm optimization and stochastic local search for identification of l, d motifs in given DNA sequences. The algorithm computes linear ... See full document
13
A Review on Clustering Analysis based on Optimization Algorithm for Datamining
... – Clustering analysis is one of the important concept of data ...the clustering problem it is one of the research based ...The clustering is belongs to the unsupervised learning in which ... See full document
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