[PDF] Top 20 Multilocus Variable Number Tandem Repeat Analysis for Investigation of Clostridium difficile Transmission in Hospitals
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Multilocus Variable Number Tandem Repeat Analysis for Investigation of Clostridium difficile Transmission in Hospitals
... C. difficile strains and assessment of nosocomial ...ning-tree analysis of the MLVA data revealed that these iso- lates consisted of several related complexes ...Minimum-spanning-tree analysis of ... See full document
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Comparison of Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Investigation of Clostridium difficile Transmission
... compared multilocus variable-number tandem-repeat analysis (MLVA) and whole-genome sequencing (WGS) in an investigation of the transmission of Clostridium ... See full document
9
Comparison of Multilocus Variable Number Tandem Repeat Analysis and Whole Genome Sequencing for Investigation of Clostridium difficile Transmission
... compared multilocus variable-number tandem-repeat analysis (MLVA) and whole-genome sequencing (WGS) in an investigation of the transmission of Clostridium ... See full document
9
Multilocus Variable Number Tandem Repeat Analysis of Clostridioides difficile Clusters in Ribotype 027 Isolates and Lack of Association with Clinical Outcomes
... investigate transmission and genetic relatedness of ...our analysis identified large clusters of indistin- guishable strains (STRD ⱕ 2), suggesting a greater extent of dissemination after the introduction of ... See full document
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Relatedness of Human and Animal Clostridium difficile PCR Ribotype 078 Isolates Determined on the Basis of Multilocus Variable Number Tandem Repeat Analysis and Tetracycline Resistance
... whole-genome analysis, and multilocus sequence typing (3, 8, 13, ...tree analysis of 158 C. difficile type 078 isolates by ...summed tandem-repeat difference (STRD) between MLVA ... See full document
6
Utilizing Rapid Multiple Locus Variable Number Tandem Repeat Analysis Typing To Aid Control of Hospital Acquired Clostridium difficile Infection: a Multicenter Study
... of Clostridium difficile ...the number of hospital-acquired C. difficile infections could be reduced by rapidly typing ...C. difficile strains using multiple-locus ... See full document
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Use of Highly Discriminatory Fingerprinting to Analyze Clusters of Clostridium difficile Infection Cases Due to Epidemic Ribotype 027 Strains
... compared multilocus variable-number tandem-repeat analysis (MLVA) and macrorestriction endonu- clease analysis using pulsed-field gel electrophoresis (PFGE) to determine ... See full document
7
Typing and Subtyping of Clostridium difficile Isolates by Using Multiple Locus Variable Number Tandem Repeat Analysis
... the analysis were 57 reference strains, all seven subtypes of PCR ribotype 001, 27 toxin A-negative, toxin B-positive isolates belonging to PCR ribotype 017 from eight different countries, and 29 isolates ... See full document
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Multilocus Variable Number Tandem Repeat Analysis and Multilocus Sequence Typing Reveal Genetic Relationships among Clostridium difficile Isolates Genotyped by Restriction Endonuclease Analysis
... specific REA groups were selected to examine the concordance between REA, MLVA, and MLST. In addition, multiple isolates of a specific REA type were selected to evaluate the stability of MLVA genotyping over time. ... See full document
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Extended Multilocus Variable Number Tandem Repeat Analysis of Clostridium difficile Correlates Exactly with Ribotyping and Enables Identification of Hospital Transmission
... Discriminatory power. All MLVA typing methods had high discriminatory powers, generating D values of 0.999 for eMLVA and the van den Berg method and 0.997 for the Marsh method, compared to a D value of 0.886 for PCR ... See full document
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Epidemic spread of ST1-MRSA-IVa in a neonatal intensive care unit, Italy
... to assess, because both interventions are usually imple- mented as a part of a composite pattern of infection control procedures [20, 23, 27]. Decolonization of staff and patients by mupirocin proved unable to control a ... See full document
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Molecular Characterization of Salmonella enterica Serovar Typhimurium Isolated from Human, Food, and Animal Sources in Malaysia
... using multilocus variable number tandem repeat analysis (MLVA) and pulsed-field gel electrophoresis ...common variable number tandem repeat (VNTR) ... See full document
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Characterization of Genetic Diversity of Bacillus anthracis in France by Using High Resolution Melting Assays and Multilocus Variable Number Tandem Repeat Analysis
... DNA analysis system ...fragment analysis system software to determine the length of each fragment in reference to the size ...highest number of single-locus variants (SLVs) would be linked ... See full document
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Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement
... multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype ... See full document
5
Comparison between Salmonella enterica Serotype Enteritidis Genotyping Methods and Phage Type
... 12. Jacobs W, Kuiling S, van der Zwaluw K. 2014. Molecular typing of Salmonella strains isolated from food, feed and animals: state of play and standard operating procedures for pulsed field gel electrophoresis (PFGE) ... See full document
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Utility of Whole Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance
... stx subtyping. The stx subtypes were determined by PCR and in silico analyses. A relatively low diversity of subtypes was de- FIG 1 Maximum-likelihood core genome phylogeny for 103 E. coli O157 isolates from Lothian, ... See full document
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Multilocus Variable Number Tandem Repeat Method for Typing Salmonella enterica Serovar Newport
... To avoid overlap in combinations of fragment sizes and dye colors, two separate triplex reactions were conducted using an iCycler thermal cycler (Bio-Rad, Hercules, CA) in 25- l vol- umes (Table 1). All primers were ... See full document
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Multilocus Variable Number Tandem Repeat Analysis Distinguishes Outbreak and Sporadic Escherichia coli O157:H7 Isolates
... single repeat, suggesting that SLVs that occur during outbreaks are likely to differ by a small number of repeats ...single repeat remains to be ... See full document
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Staphylococcal Interspersed Repeat Unit Typing of Staphylococcus aureus: Evaluation of a New Multilocus Variable Number Tandem Repeat Analysis Typing Method
... interspersed repeat unit (SIRU) method applied to a diverse collection of 104 Staphylococcus aureus isolates previously characterized by pulsed-field gel electrophoresis (PFGE), spa typing, multilocus ... See full document
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MLVA typing of Haemophilus influenzae isolated from two Iranian university hospitals
... Various repeat regions were identified in the full ge- nome sequence of H. influenzae (30, 31). The length of the VNTRs was a stable genetic marker for separate colonies derived from a single clinical specimen or ... See full document
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