[PDF] Top 20 Vector algebra in the analysis of genome wide expression data
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Vector algebra in the analysis of genome wide expression data
... hybridization data from a study of the target of rapamycin (Tor) proteins) [11], the angles between a reference expression vector of a wild-type strain treated with rapamycin and four other ... See full document
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Loci nominally associated with autism from genome-wide analysis show enrichment of brain expression quantitative trait loci but not lymphoblastoid cell line expression quantitative trait loci
... for expression quantitative trait loci (eQTL) in relevant tissues ...the expression of genes are more likely to be associated with disease phenotypes ...available data from the AGP GWAS [6], the SNP ... See full document
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Genome wide analysis of gene expression during early Arabidopsis flower development
... whose expression gradually increased during the course of the experiment, belong to class II and thus might contribute to a reduction of cell proliferation rates in maturing floral ...our analysis of closely ... See full document
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Genome wide transcriptional analyses in Anopheles mosquitoes reveal an unexpected association between salivary gland gene expression and insecticide resistance
... microarray data was per- formed to evaluate whether D7 expression is associated with insecticide resistance in other species of Anopheles ...microarray data from insecticide-resistant Anopheles ... See full document
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Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data
... factors may be involved in the regulation of the specialized functions of liver (Figure 5b). For example, Chicken oval- bumin upstream promoter (COUP) can reduce the expres- sion of hepatocyte nuclear factor 4 (HNF4), ... See full document
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Genome wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus
... Inconsistent genome annotation in strains USA300, MRSA252, and NCTC ...USA300 genome specifies these loci as being intergenic ...our data clearly demonstrate that incorrect genome an- notation ... See full document
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Genome-wide identification and expression analysis of DNA demethylase family in cotton
... sequence, genome sequence of identified candidate DNA demethylase were downloaded from Gossypium arboreum ...tein analysis was performed by using ProtParam (https:// ... See full document
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Genome-Wide Analysis on Inbreeding Effects on Gene Expression in Drosophila melanogaster
... real expression change as detected by ...published data with ours would require a full treatment of the raw data for common normalization, similar statistical analysis, ...simple ... See full document
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Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma
... Gene expression data was derived from NimbleGen human whole genome expression microarrays (array 2005_04-20_Human_60 mer_1in2) containing 380,000 probes with an average of 11 probes per ... See full document
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Genome-wide gene expression analysis of chemoresistant pulmonary carcinoid cells
... microarray analysis (Applied Biosystems 1700) were carried out following the manufacturer’s chemiluminescence detection kit ...protocol. Data for each cell line (n = 2) were filtered, normalized, and ... See full document
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Semiparametric methods for genome wide linkage analysis of human gene expression data
... the expression levels of many thousands of genes in a short ...microarray data in the literature, limited work has been done in mapping expression quantitative trait loci (eQTL) that influence the ... See full document
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Targeting mitochondrial biogenesis to overcome drug resistance to MAPK inhibitors
... analyzed genome-wide gene expression data for 947 human cancer cell lines collected for the Cancer Cell Line Encyclopedia (CCLE) project ...enrichment analysis (GSEA). Not surprisingly, ... See full document
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Elucidating Molecular Networks That Either Affect or Respond to Plasma Cortisol Concentration in Target Tissues of Liver and Muscle
... trait-correlated expression analysis, screening for expression quantitative trait loci (eQTL), genome-wide association (GWA) studies, and causality modeling to identify candidate genes ... See full document
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Genome wide gene expression analysis in mouse embryonic stem cells
... a wide variety of matured ...Gene expression analysis may be a valuable tool to elucidate either the molecular pathways involved in self-renewal and pluripotency, or early differentiation and to ... See full document
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<p>Comprehensive Analysis of SiNPs on the Genome-Wide Transcriptional Changes in Caenorhabditis elegans</p>
... ontology analysis revealed that the signi fi cant change of gene functional categories triggered by SiNPs was focused on locomotion, determination of adult lifespan, reproduction, body morphogenesis, multicellular ... See full document
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A Genome Wide Analysis of Adhesion in Caulobacter crescentus Identifies New Regulatory and Biosynthetic Components for Holdfast Assembly
... Numerous reports have debated the roles of pili and the flagellum in surface attachment (13–15, 43, 44). Our unbiased, genome-wide analysis of adhesion unam- biguously identified both appendages as ... See full document
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Genome Wide Sensitivity Analysis of the Microsymbiont Sinorhizobium meliloti to Symbiotically Important, Defensin Like Host Peptides
... (ii) Extracellular polysaccharides: succinoglycan and capsular polysaccharide. Succinoglycan is a secreted bacterial polysaccharide essential for the formation and directed growth of plant root-hair infection threads (1, ... See full document
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Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis
... Parallel analysis of these genes in embryos electroporated with GFP alone is used as a control to identify any non-specific ...gene expression has been ...exogenous expression of DNA have a small but ... See full document
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The genome of the biting midge Culicoides sonorensis and gene expression analyses of vector competence for Bluetongue virus
... sonorensis genome is its GC content, which is among the lowest reported for Dipteran species (although close to identical to the non-biting midge ...on genome functioning and species ecology in microbes ... See full document
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MicroRNA-181c prevents apoptosis by targeting of FAS receptor in Ewing’s sarcoma cells
... Our data shows that miR-181c promotes the prolifera- tion of ES cells via induction of anti-apoptosis mecha- nisms, and not by affecting the cell cycle pausing at G1/ G0 ...sion vector into SKES1 cells ... See full document
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