DNA/Protein sequence analysis
Genetic analysis of the DNA recognition sequence of the P2 Cox protein.
... To study the in vivo effects of the Cox protein on the early promoters of P2 vir3, vir3 corll, vir24, and vir24 cor3l mutants, each promoter was cloned in front of a promoterless cat gen[r] ...
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Analysis of the complete DNA sequence of murine cytomegalovirus.
... assembly protein (UL80); CHS, conserved herpesvirus spliced gene (UL89); DNase, alkaline exonuclease (UL98); DNApol, DNA-dependent DNA polymerase (UL54); DPAP, DNA polymerase accessory ...
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Theoretically Analysis of Fusion Protein, Sequence and Folding
... fusion protein, researchers improved that the longer linker is better for protection the folding and biological activity and can be cleaves by cellular protease, these features promote investigators to design ...
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Some intriguing high-throughput DNA sequence variants prediction over protein functionality
... desired DNA sequence information ...the protein function and DNA sequence prediction can be computed precisely using best fitness parent in genetic ...of sequence-known proteins ...
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The human foamy virus Bel-1 transcription factor is a sequence-specific DNA binding protein.
... several DNA response elements for the essential Bel-1 regulatory protein of HFV have been mutationally de- fined, it has remained unclear whether Bel-1 is targeted to these sites by interaction with a ...
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A computational analysis of protein-DNA complex structures
... all protein families and therefore can be considered to uni versally recognise single ...short DNA sequences by contacting several base-steps sim ...e DNA is relatively und isto rted , complex in ...
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Human herpesvirus 6B origin-binding protein: DNA-binding domain and consensus binding sequence.
... main B was sufficient for DNA binding in Southwestern blot- ting analysis (Fig. 10). An alternative, but less likely, possibility is that the 1 M urea-insoluble GST-OBP fusion proteins used for Southwestern ...
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Analysis of Compression Techniques for DNA Sequence Data
... Zhao-Hui Qi et al, proposed Huffman coding method to visualize and analyze DNA sequences in 2011. Huffman Coding Algorithms compress the B-globin gene of 11 distinct species Six ND6 protein without any loss ...
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Mitochondrial DNA sequence analysis in Anabantoidei fish
... [2] Liu, J.X., Gao, T.X., Yokogawa, K. and Zhang, Y.P. steine residues are involved in the formation of two disulfide bonds in a pattern analogous to the “big loop”, “little loop” (in human GH) [26], which plays an ...
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From sequence to structure and back again: approaches for predicting protein-DNA binding
... vitro analysis is complicated by two facts typical of TFs: TFs usually bind to multiple target sequences with varying affinity and they often regulate multiple ...silico analysis is not straight-forward ...
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Sequence-specific binding of DNA by the Moloney murine leukemia virus integrase protein.
... Murine leukemia virus pol gene products: analysis with antisera generated against reverse transcriptase and endonuclease fusion proteins expressed in Escherichia coli.. Affinity purifica[r] ...
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Multiple sequence alignment algorithms for the phylogenic analysis of chloroplast DNA
... the DNA or protein samples being considered (Baxevanis & Ouellette ...most sequence comparison methods use sequence alignment algorithms that inherently “assumes conservation of contiguity ...
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New adaptive exon predictors for identifying protein coding regions in DNA sequence
... multiplication and accumulation (MAC) operations. Usually they perform this operation in a single instruction cycle as well as addition or subtraction. In this thesis, we are not trying to provide a precise ...
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II. DNA SEQUENCE
... Abstract—The sequence design is a crucial problem in DNA based ...of DNA strands proposed in DNA computing papers since ...The analysis shows that many input sets should not be used for ...
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Sequence-specific DNA binding by the v-erbA oncogene protein of avian erythroblastosis virus.
... Our own results confirm the ability of the v-erbA protein to recognize specific DNA sequence elements similar to those recognized by the normal hormone receptor but also indicate that th[r] ...
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On the Number of Ancestors to a DNA Sequence
... The number of segments is subject to higher fluctuations than the number of sequences, since a sin- gle coalescent event can reduce the number of seg- ments by any number,[r] ...
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Sequence and transcription analysis of the human cytomegalovirus DNA polymerase gene.
... We report here the sequence and transcription analysis of an HCMV open reading frame HFLF2 which shows extensive amino acid homology to the polymerase of HSV type 1 HSV-1 and Epstein-Bar[r] ...
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Mitochondrial DNA D-loop Sequence Analysis of Busha Cattle
... Genomic DNA was extracted from ear clips using DNeasy Blood & Tissue Kit (Qiagen GmbH, ...conserved sequence block (nt positions 15741-16338; 1-396) of the Bos taurus mitochondrion complete genome NCBI ...
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Distance based phenotypic association analysis of DNA sequence data
... High-throughput sequencing technology allows identifica- tion of new rare alleles in a human population, but the sparseness of these alleles in samples becomes an impor- tant obstacle to detecting the true effects of ...
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Survey of Compression of DNA Sequence
... a DNA-specific disk-based algorithm designed to compress large DNA ...input sequence now consists of a combination of terminals and ...input sequence with repeated substrings replaced by ...
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