Isolates and sequence type (ST) data sets
Genome analysis of environmental and clinical P. aeruginosa isolates from sequence type-1146
... CF isolates acquire hyper-mutator capabilities by mutations in mutS or mutT genes, increasing the mutation rate and consequently the rate of mutations coding for antibiotic ...resistances. Isolates of ...
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Multi-locus sequence type analysis of Shigellas pp. isolates from Tehran, Iran
... five sequence types with ST 152 as the dom- inant sequence type being composed of ...among sequence types for better prevention, control and treatment of ...
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A Taxonomy Framework for Unsupervised Outlier Detection Techniques for Multi-Type Data Sets
... in data sets on the basis of clustering concepts and statistical ...input data, which can be achieved by either supervised classification based on priori knowledge of the data or unsupervised ...
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Serotype and Genotype (Multilocus Sequence Type) of Streptococcus suis Isolates from the United States Serve as Predictors of Pathotype
... Associations among serotypes, STs, and pathotypes, although identified by individ- ual analyses, were not evident in the MCA, indicating both serotype and ST together could not indicate pathotype. We investigated ...
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Partitioning clustering algorithms for protein sequence data sets
... protein sequence databases. The unsupervised classification of these data into functional groups or families, clustering, has become one of the principal research objectives in structural and functional ...
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Sequence Classification in Data Mining With Pattern Based Item Sets
... right run the show. In the other case, the class of a sequence is determined by things that happen in the sequence dependably in the very same request. At first glance, a classifier dependent on consecutive ...
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The omp2 Gene of HPS type Bacteria Cloning and Sequence Analysis Isolates from Sichuan Province
... gene sequence encoding the same amino acid with varying degrees of differ- ence in codon usage frequency, such as those 4 Ala codon pre- fer GCA and GCT, 4 Pro codon prefer CCA, 2 Gln codon use only the CAA, Gly ...
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Sequence variation in the haemagglutinin neuraminidase gene of human parainfluenza virus type 3 isolates in the UK
... To see the final version of this paper please visit the publisher’s website. Access to the published version may require a subscription. Author(s): K. R. Collins and A. J. Easton Article Title: Sequence variation ...
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From interval-valued data to general type-2 fuzzy sets
... utilising data analysis and transformation techniques to enable deeper and clearer understanding of complex ...complex data to enable better decision making, particularly in medical ...fuzzy sets and ...
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From interval valued data to general type 2 fuzzy sets
... utilising data analysis and transformation techniques to enable deeper and clearer understanding of complex ...complex data to enable better decision making, particularly in medical ...fuzzy sets and ...
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Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
... Currently, GATK and other variant callers do not effectively use multiple datasets from the same sample to refine genotype calls and find likely FPs and FNs. A couple methods have recently been proposed by the 1000 ...
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Approaches to estimating inbreeding coefficients in clinical isolates of Plasmodium falciparum from genomic sequence data
... As genomic data enables more elaborate statistical models for mixed infections and a broader understand- ing of P. falciparum genetic epidemiology, it will still be useful for field researchers to connect their ...
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Multilocus Sequence Typing of Klebsiella pneumoniae Nosocomial Isolates
... This is in agreement with the common view that ESBL plas- mids are easily transferred among K. pneumoniae strains and that quinolone resistance can emerge during therapy. Inspection of the suspected epidemiological ...
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Dimensions of subsets of cantor type sets
... The following section will give the basic definitions and notations of the paper, and the proofs of the above results are displayed in Section 3. 2. Definitions and notations Let I = [0, 1] be the unit interval and M = { ...
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Type-2 fuzzy entropy-sets
... fuzzy sets and extensions) and applied (image processing, classifi- cation, machine learning, data mining and big ...Fuzzy Sets and Systems, Information Fusion, International Journal of Computational ...
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FONZIE: An optimized pipeline for minisatellite marker discovery and primer design from large sequence data sets
... Birch PRJ, Whisson SC, Judelson HS, Nusbaum C: Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 2009, 461:393-398. 29. Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, ...
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Molecular Phylogenetic Analysis of Indonesian Fusarium Isolates from Different Lifestyles, based on ITS Sequence Data
... 2009, Wang et al. 2011). This information suggested that researchers have to be careful during interpretation of the phylogenetic tree generated from ITS sequences (Cheng et al. 2008, O’Donnell et al. 2008). This study ...
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Use of Whole Genus Genome Sequence Data To Develop a Multilocus Sequence Typing Tool That Accurately Identifies Yersinia Isolates to the Species and Subspecies Levels
... genome sequence data of 241 strains encompassing every known species in the ...enormous data set to create a multilocus sequence typing-based scheme that can identify Yersinia strains to the ...
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Scalable And Efficient Outlier Detection In Large Distributed Data Sets With Mixed-type Attributes
... The advantages of AVF are that it does not create itemsets and that it entails only a single pass over the entire dataset. Also, as shown from the experiments with the simulated datasets, the runtime of AVF increases ...
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A comparative study of Level II fuzzy sets and Type II fuzzy sets
... Keywords: Type 2 fuzzy sets, Level 2 fuzzy ...fuzzy sets and type II fuzzy sets are generalizations of fuzzy set theory for modeling higher order of ...
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