mRNA - based analysis using the pmoA microarray
Analysis of Microarray based Biological Pathway using Data Mining
... data analysis methods has led to the emergence and fast growth of a promising new field: ...Pathway-level analysis can provide important insights for making biological inferences and hypothesis from genetic ...
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Original Article Potential targeting pathways of microRNA-376c in human cholangiocarcinoma: an analysis based on mRNA microarray and bioinformatics
... carcinoma based on data from an mRNA microarray and bioinformatical ...Agilent mRNA microarray GSE47186 was obtained from Gene Expression Omnibus, which included the differently ...
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Identification of circRNA–miRNA–mRNA regulatory network in gastric cancer by analysis of microarray data
... is associated with advanced TNM stage, recurrence, and poor prognosis. In vitro and in vivo experiments confirmed that inhibition of KIF23 inhibits prolifera- tion of GC cells, leading the authors to conclude that KIF23 ...
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Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray
... hybridization microarray was success- fully applied in the study of transcripts changes asso- ciated to papaya fruit, a commercially relevant crop from a non-model ...
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Analysis of ripening related gene expression in papaya using an Arabidopsis based microarray
... hybridization microarray was success- fully applied in the study of transcripts changes asso- ciated to papaya fruit, a commercially relevant crop from a non-model ...
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Screening of Immunosuppressive Factors for Identifying Breast Cancer Malignant Phenotypes Using mRNA Microarray Datasets
... subsequent analysis. GO term and KEGG pathway analysis based on DEGs reveals that malignant-phenotype-associated molecular mechanisms for breast cancer cell lines and tissue samples are different, ...
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Apriori Gene Set-based Microarray Analysis for Disease Classification Using Unlabeled Data
... set-based microarray analysis allows researchers to better analyze the gene expression data for studying complex diseases like ...form using gene set information, the biomarkers will have ...
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DEVELOPMENT OF MAP/REDUCE BASED MICROARRAY ANALYSIS TOOLS
... of microarray data using the Affymetrix GeneChip® ...of microarray datasets for human genomes from thousands of experiments has reached the terabyte ...Affymetrix microarray analysis ...
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MICROARRAY DATA ANALYSIS TOOL USING JAVA AND R
... bound mRNA remains untranslated resulting in reduced expression of the corresponding gene. The function of miRNAs appears to be in gene regulation. miRNAs have been reported to be critical in the development of ...
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Pathway based microarray analysis based on multi-membership gene regulation
... DNA microarray platforms including one- and two-channel formats, cDNA and oligonucleotide microarrays, in-house spotted microarrays, and commercially developed ...were based on the use of PCR-amplified cDNA ...
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Genomic microarray analysis
... a microarray is a collection of microscopic features immobi- lized on a solid support ...measured using a fluorescent scanner to produce both quantitative (gene expression) and qualitative (diagnostic) ...
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Classification of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN
... of pmoA sequences, a common marker for methanotrophic ...for pmoA was developed based on a phylogenetic analysis of available ...of pmoA present in public databases, including both ...
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Microarray-based cancer prediction using soft computing approach.
... that the expression of human calgizzarin is remarkably elevated in colorectal cancers compared with that in normal colorectal mucosa by a large scale random cDNA sequencing and Northern blot analysis. 56 Our rules ...
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Model based cluster analysis of microarray gene expression data
... Results and discussion Data and preprocessing Pneumococcal otitis media is one of the most common dis- eases in children. Almost every child in the United States experiences at least one episode of acute otitis media by ...
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Improved analytical methods for microarray based genome composition analysis
... Each dataset must exhibit an almost identical distribution of ratio values in order for the chosen value to fall in the same relative location along the distribution. Variation in the width of the ratio distribution, ...
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A-MADMAN: annotation-based microarray data meta-analysis tool.
... The platform integration step is not clearly addressed by most of the available tools. Indeed, the ExpressionFileCreator module of GenePattern, although allowing the use of custom CDF, cannot consider more than one ...
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Dynamic Path Analysis And Model Based Clustering Of Microarray Data
... likelihood based clustering scheme for clustering AML patients based on microarray ...integrative analysis across multiple data types. The joint analysis of the methylation and ...
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Evaluation of chronic lymphocytic leukemia by BAC-based microarray analysis
... performed microarray-based comparative genomic hybridization (aCGH) using a bacterial artificial chromosome (BAC)-based microarray designed for the detection of known constitutional ...
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A-MADMAN: Annotation-based microarray data meta-analysis tool
... annotated using not only the original metadata but also a proprietary, controlled, but unconstrained vocabulary of descriptive ...simply using Boolean queries on the available tags and then used to ...
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Identification of biomarkers for ischemic cardiomyopathy based on microarray data analysis
... available microarray dataset GSE42955 was downloaded from Gene Expres- sion Omnibus (GEO, ...The mRNA profiling was performed using 17 left ventricular transmural samples, including 12 obtained from ...
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