Multiple Sequence Alignment
Heuristics for multiobjective multiple sequence alignment
... Aligning multiple sequences arises in many tasks in ...reformulate multiple sequence alignment from a multiobjective point of ...several sequence alignments that represent a trade-off ...
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A Tabu Search Approach to Multiple Sequence Alignment
... Effective sequence alignment methodologies also provide insight into the structure\ function of a sequence and are the first step in constructing evolutionary ...to multiple sequence ...
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Multiple Sequence Alignment by Conformational Space Annealing
... for multiple sequence alignment (MSA), which we call ...pairwise sequence alignments between constituting ...recent alignment method ...minimum alignment but also many distinct ...
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Progressive Multiple Sequence Alignment with Indel Evolution
... of multiple sequence alignment has been framed in the frequentist framework, and is implemented in a user-friendly software ...and alignment inference but it will also facilitate the ...
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Cluster Analysis Method for Multiple Sequence Alignment
... of sequence alignment. The problem of multiple sequence alignment (MSA) is a proposition of evolutionary ...individual sequence position is established for each column in the ...
7
Assessing the efficiency of multiple sequence alignment programs
... the alignment accur- acy and computational cost of nine different multiple sequence alignment programs with the BAliBASE data- set and discuss the relevance of some implementations embedded in ...
8
Memory-Efficient A* Heuristics for Multiple Sequence Alignment
... In multiple sequence alignment, three or more se- quences must be aligned, so even with Hirschberg-style one- dimensional space reductions, DP algorithms still require too much ...the ...
7
Bootstrapping Lexical Choice via Multiple Sequence Alignment
... applies multiple-sequence alignment techniques to the mapping-dictionary acquisition ...of multiple verbalizations helps the system learn several ways to express ...
8
Multiple Sequence Alignment Menggunakan Hidden Markov Model
... menghasilkan Multiple Sequence Alignment adalah dynamic ...n sequence, metode ini membangun matriks ...panjang sequence. Multiple Sequence Alignment memerlukan ...
10
Prenominal Modifier Ordering via Multiple Sequence Alignment
... that multiple sequence alignment is well-suited for aligning linguistic sequences, and that these alignments can be used to predict prenominal modifier ordering for any given set of ...
9
Multiple Sequence Alignment of Transmembrane Beta-Barrel Proteins
... 1) Our work is to develop a multiple sequence alignment tool specific to transmembrane beta-barrel proteins. This requires the collection of a gold standard dataset of TMBBs, and the eval[r] ...
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Integer Linear Programming Models for Multiple Sequence Alignment
... A multiple sequence alignment of N-acetylglucosamine-binding protein sequences highlighting conserved cysteines, adapted from ...ple sequence alignment is a hard optimization problem ...
11
Multiple sequence alignment augmented by expert user constraints
... A multiple sequence alignment carried out using an automatic alignment algorithm often results in an alignment with several small gaps in the ...automatic alignment program by ...
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Multiple sequence alignment with user-defined constraints at GOBICS
... to multiple sequence alignment in which the user can explicitly specify parts of the sequences that are biologically related to each ...a multiple alignment that respects these ...
9
CSA-X: Modularized Constrained Multiple Sequence Alignment
... constrained multiple sequence alignment program, CSA-X, allows the user to specify regular ex- pression constraints for the multiple sequence alignment, and the resulting ...
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Refin-Align: New Refinement Algorithm For Multiple Sequence Alignment
... 1: Multiple sequence alignment. Multiple sequence alignment can help biologist to pre- dict structure and function information for a set of se- ...roles. Multiple ...
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Multiple sequence alignment algorithms for the phylogenic analysis of chloroplast DNA
... progressive multiple sequence alignment algorithm that improves the sensitivity through selective weighting of sequences and substitution ...pairwise alignment on all the sequences in order to ...
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Inferring phylogenies of evolving sequences without multiple sequence alignment
... simulated sequence sets of various sizes in both nucleotides and amino acids, we systematically assess the accuracy of phylogenetic inference using an alignment-free approach, based on D 2 statistics, under ...
9
Learning to Paraphrase: An Unsupervised Approach Using Multiple Sequence Alignment
... applies multiple-sequence alignment to sentences gathered from unannotated compara- ble corpora: it learns a set of paraphrasing pat- terns represented by word lattice pairs and au- tomatically ...
8
Multiple Sequence Alignment Menggunakan Nature-Inspired Metaheuristic Algorithms
... ABSTRACT Multiple sequence alignment is a fundamental tool that often needed to process bioinformatic ...If multiple sequence alignment is completed, we can process other further ...
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