Protein-coding
Detecting positive selection in protein coding genes
... Kreitman, 1991) for protein coding data has been more successful at detecting selection. The basic idea behind MK test is similar to that underlying HKA test. The MK test compares the ratio of nonsynonym ...
191
A subset of conserved mammalian long non coding RNAs are fossils of ancestral protein coding genes
... of protein-coding genes that lost their coding po- tential and untranscribed noncoding DNA that gained ele- ments promoting production of stable transcripts, perhaps via adoption of sequences from ...
15
Integrative analysis of protein-coding and non-coding RNAs identifies clinically relevant subtypes of clear cell renal cell carcinoma
... of protein-coding genes and non-coding RNAs may contribute to delineate molecular heterogeneity within ccRCC and may help guiding treatment of ...
15
cncRNAs : Bi functional RNAs with protein coding and non coding functions
... roles, protein coding and non- coding, in myogenic differentiation ...a protein product encoded by SRA ...novo protein synthesis inhibitor, cyclohex- amide and concluded that SRA ...
13
SIGNAL PROCESSING IN PROTEIN CODING DNA FOR CANCER DETECTION
... the protein coding area of a gene will be a multiple of three, that the area will be bounded by a START codon and a STOP codon, and that there will be no other STOP codon in the coding reading frame ...
7
Designing, Optimization and Construction of Myelin Basic Protein Coding Sequence Binding to the Immunogenic Subunit of Cholera Toxin
... 15. Guruprasad K, Reddy BB, Pandit MW. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. ...
7
Site-to-site Rate Variation in Protein Coding Genes
... The protein sequences were aligned using ClustalW (Thompson et al., 1994) then adjusted manually. DNA alignments were obtained by reverse translation. Phylogenetic trees for each clade were found using ...
155
A Novel Fast Algorithm for Exon Prediction in Eukaryotic Genes using Linear Predictive Coding Model and Goertzel Algorithm based on the Z Curve
... called protein-coding regions because they carry the necessary information for protein coding ...of protein-coding regions is very important in understanding of biological ...
14
The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica – and the first record for a putative Atpase subunit 8 gene in marine bivalves
... All protein coding and the rrnL gene sequences of 24 molluscs (10 bivalves, 4 cephalo- pods, 2 scaphopods, 7 gastropods and 1 polyplacophore [tab 6]) were concatenated in a single Nexus ...
14
Building and Mining an Atlas of the Mammalian Circadian Transcriptome
... coding genes expressed multiple spliceforms detected in the RNA-seq data. Breakdown of circadian genes and ncRNAs.. A) Number of protein-coding genes in each organ with circadian express[r] ...
108
Use of RNA sequencing to evaluate rheumatic disease patients
... surrounding protein-coding genes; microRNA (miRNA), short non-coding RNAs (18 to 24 bp) that can cause silencing or degradation of mRNA, ultimately leading to a decrease in the amount of ...
10
Biological function in the twilight zone of sequence conservation
... lineage-specific protein-coding genes (shown in red) or non-coding genes (shown in purple) present in one or more of the human, mouse and opossum (Monodelphis domestica) ...Lnx3 ...
9
Genomic and Bioinformatics Analyses of HAdV 4vac and HAdV 7vac, Two Human Adenovirus (HAdV) Strains That Constituted Original Prophylaxis against HAdV Related Acute Respiratory Disease, a Reemerging Epidemic Disease
... changing protein-coding po- ...II coding regions of the HAdV-7vac have been shortened by a 19-bp and a 24-bp deletion, ...non- protein-coding genes whose products have been shown to an- ...
12
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
... of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR ...of protein product names and connection to various protein family ...
5
Comparative Sequence Analysis of the Core Protein and Its Frameshift Product, the F Protein, of Hepatitis C Virus Subtype 1b Strains Obtained from Patients with and without Hepatocellular Carcinoma
... It was previously reported that mutations were clustered in a region between aa 39 and 76 of the core proteins of HCV isolates from patients with HCC, and therefore, the region was referred to as a clustering variable ...
6
Inventory
... Boundaries of protein coding genes were normalized for Col-0 seedling using Araport11 gene.. 22.[r] ...
12
On the Immortality of Television Sets: "Function" in the Human Genome According to the Evolution-Free Gospel of ENCODE
... human protein-coding gene is transcribed, its primary transcript contains not only reading frames but also introns and exonic sequences devoid of reading ...the coding of proteins, whereas the other ...
13
Global Human Health Risks for Arthropod Repellents or Insecticides and Alternative Control Strategies
... neighboring protein-coding genes are ...associated protein-coding genes are defined by the GREAT algorithm as those within 1,000 kb of an input lncRNA transcription ...a ...
215
Technical Note 1 Mapping Quantitative Trait Loci onto Chromosome-
... Coordinates and annotations of flax protein coding genes on the most recent release of the 32. chromosome-scale pseudomolecules[r] ...
16
Two regions of the adenovirus early region 1A proteins are required for transformation.
... A series of deletion mutants spanning the entire protein-coding region of ElA were constructed to define the regions of the protein that are essential for transformation of primary BRK c[r] ...
9