regulatory elements
Identification of transcriptional regulatory elements for Ntng1 and Ntng2 genes in mice
... Mouse Ntng1 and Ntng2 are large genes that span more than 362 kb and 53 kb, respectively. Their cis-regulatory elements may also be widely distributed. The insert size limitation of high-copy plasmid ...
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Putative cis regulatory elements in genes highly expressed in rice sperm cells
... Tools can be used for detecting unknown motifs in related DNA sequences. For example, MEME uses sta- tistical modeling techniques to choose the width, num- ber of occurrences and descriptions for each motif. Using MEME, ...
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Identification and functional characterization of microRNA regulatory elements in Brassicaceae
... sequence-specific regulatory elements of eukaryotic ...detect regulatory elements in the promoter regions provided a pathway to understand the regulatory mechanism of plant microRNA ...
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Cloning and the characterization of the regulatory elements of the Ly-6E.1 (Sca-1) gene
... A t the com m encem ent of this stu d y , only the partial isolation of the genom ic sequences of Ly-6E.l an d Ly-6A.2 h ad been accom plished (K han et al., 1990; Figure 3. 5. B). This sequence covered from 7 kb ...
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Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1
... addition, elements associated with cone genes (Thrb, Gngt2, Gnb3) were also active in visinin-positive cells, as ...For elements associated with rod-enriched genes, there was some divergence from expected ...
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Genome wide identification of regulatory elements in Sertoli cells
... With the exception of the TESCO element, few distal regulatory elements have been identified for sex-determining genes. Our dataset provides an excellent resource with which to identify enhancers driving ...
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Characterization of interleukin (IL)-1β regulatory elements and chromatin conformation in macrophage activation
... activities of different regulatory elements [75]. Recent studies showed that more than 1 million putative enhancers, which greatly exceeds the number of coding genes, have been identified in the human ...
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Remotely acting SMCHD1 gene regulatory elements: in silico prediction and identification of potential regulatory variants in patients with FSHD
... between regulatory regions but are also involved (together with other transcription factors) in con- trolling chromatin-looping interactions and structure (reviewed in [19]) although a recent study [16] indicated ...
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Cell and viral regulatory elements enhance the expression and function of a human immunodeficiency virus inhibitory gene.
... viral regulatory elements can enhance expres- sion of an antiviral gene ...viral regulatory elements were incorporated into a previously reported CD4 locus control region to increase the ...
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Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
... specific regulatory elements; oncogene activation in a non-PAX3-expressing cell type may therefore be essen- tial for the development of the ...transcriptional regulatory mecha- nisms of PAX3, FOXO1 ...
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Comparative analysis of regulatory elements of the Myf-5 gene
... Data from our laboratory had previously shown that the Myf-5 gene contained regulatory elements involved in controlling the ventral expression domain of Myf-5 in the somites (see Fig. 8C). Sequence ...
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Identification of an effective siRNA target site and functional regulatory elements, within the hepatitis B virus posttranscriptional regulatory element
... Results: Computational analysis of the PRE sequence revealed several conserved regulatory elements that are predicted to form local secondary structures some of these within known regulatory regions. ...
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Origins of Cdx1 regulatory elements suggest roles in vertebrate evolution
... A major challenge is to identify the genetic changes respon- sible for appearance of new animal groups during the course of evolution. To our knowledge, we now provide the first evidence that origins of ...
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Variable levels of drift in tunicate cardiopharyngeal gene regulatory elements
... We tested these computational predictions through sequential minimization of the C. inflata Hand-like 5 ′ intergenic region using LacZ reporter constructs (Fig. 4a). The full-length construct (Coinfl.HL −1737) containing ...
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Identification of Long-Range Regulatory Elements in the Human Genome
... transcriptional regulatory function and activity of certain types of genomic ...of regulatory elements using the molecular biology technique known as chromatin immunoprecipitation (ChIP) with ...
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Role of conserved cis-regulatory elements in the post-transcriptional regulation of the human MECP2 gene involved in autism
... cis-regulatory elements that we analyzed (microRNA target sites, AU-rich elements, and G-quadruplexes) mapped to evolutionarily conserved regions in the 3′-UTR of the long MECP2 isoform, which is ...
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Natural antisense RNAs as mRNA regulatory elements in bacteria: a review on function and applications
... thermosensor regulatory elements, are settled at the 5’ UTR of ...responsive elements and translation initiation, so that low temperature causes target mRNA RBS to fold into a helical structure ...
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Contributions of Viral Splice Sites andcis-Regulatory Elements to Lentivirus Vector Function
... HIV regulatory elements in pTV, except for RRE, have only moderate effects on vector ...these regulatory elements could be deleted together, we combined different mutations and an- alyzed ...
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An Overview of Transcription Regulatory Elements in Plant
... CA elements (Yamamoto et ...GA elements are plant specific (Yamamoto et al. 2009). Evening elements AAAATATCT, a DNA regulatory elements are enriched in the promoter of cold-regulated ...
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Regulatory elements of Xenopus col2a1 drive cartilaginous gene expression in transgenic frogs
... Fig. 2. Diagrams of the regulatory elements used in this study. (A) The 491-bp, 5´- promoter region used in the reporter includes 366 bp of untranscribed DNA and 125 bp of the 5´ UTR. A TFSearch analysis ...
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