Single nucleotide polymorphism (SNP) analysis
A Soybean Transcript Map: Gene Distribution, Haplotype and Single-Nucleotide Polymorphism Analysis
... single-base extension primer sequences are available in the database. DISCUSSION SNP discovery in soybean: Of a total of 9459 primer sets designed to EST sequence and examined for locus- specific PCR amplification ...
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Hairpin Primers for Simplified Single Nucleotide Polymorphism Analysis of Mycobacterium tuberculosis and Other Organisms
... The HP assays enabled most alleles to be easily discrimi- nated under a single standard condition. The efficiency of many of these assays could likely have been improved by indi- vidualizing the PCR conditions for ...
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Precise Dissection of an Escherichia coli O157:H7 Outbreak by Single Nucleotide Polymorphism Analysis
... set analysis can serve as an adjunct to gel-based typing of ...postsequencing analysis was aided by knowledge of the phylogeny of ...phylogenetic analysis to stringently de- fined SNPs and ORFs in ...
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Applying Gene Expression, Proteomics and Single-Nucleotide Polymorphism Analysis for Complex Trait Gene Identification
... (QTL) analysis of an intercross involving the inbred mouse strains NZB/ BlNJ and SM/J revealed QTL for a variety of complex ...a single approach such as mRNA expression may fail to identify a QTL ...
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Analyzing a single nucleotide polymorphism in schizophrenia: a meta-analysis approach
... Abbreviations: pval, P-value; OR, odds ratio; CI, confidence interval; lb, lower bound; ub, upper bound; (Y), Yuxi; (K), Kunming. studies included the risk allele frequencies of the SNP in the comparison groups. Li et al ...
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Computational Analysis of Single Nucleotide Polymorphism (SNPs) in HumanSLC5A1 Gene
... (Single nucleotide polymorphisms) in the SLC5A1 gene and to determine their effects on the protein function and ...structural analysis was done by modeling using Project Hope and Chimera after ...
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Single Nucleotide Polymorphism Discovery in Pines (Pinus) Species for Hybrid Analysis.
... and analysis of species-specific SNP variation, to understand relationships between genetic variation and phenotypic variation with groups of closely related ...
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Software for tag single nucleotide polymorphism selection
... Analysis of two different sets of SNP genotype data from the HapMap is used to judge the practical aspects of using each of the programs considered, as well as to make some general observations about the ...
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Analysis of Single Nucleotide Polymorphism in Adolescent Idiopathic Scoliosis in Korea: For Personalized Treatment
... Gene analysis utilizing single nucleotide polymorphism (SNP) has been developed as a diagnostic tool for use in Caucasians but not ...gene analysis as a di- agnostic tool for ...
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A General Overview of Detection Methods for Single Nucleotide Polymorphism
... reference genome sequence [8]. Through sequence comparison, we can find a lot of biological information related to the genetic evolution of organisms. The main idea of two-sequence alignment is based on the similarity ...
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Detection and analysis of disease-associated single nucleotide polymorphism influencing post-translational modification
... Post-translational modification (PTM) plays a crucial role in biological functions and corresponding disease developments. Discovering disease-associated non-synonymous SNPs (nsSNPs) altering PTM sites can help to ...
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A High-Density Single Nucleotide Polymorphism Map for Neurospora crassa
... of single nucleotide polymorphisms (SNPs) between the reference Neurospora crassa strain Oak Ridge and the Mauriceville strain (FGSC 2555), of sufficient density to allow fine mapping of most ...segregant ...
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Methods for demographic inference from single-nucleotide polymorphism data
... components analysis More that 30 years ago, Cavalli-Sforza and Piazza (1978) studied the relationship between genetic differences and evolutionary ...components analysis to gene frequency data and con- ...
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Comparison of tagging single nucleotide polymorphism methods in association analyses
... We used these tagging SNP selection methods in genomic regions known to harbor associations with quantitative phenotypes [7]. We sought to assess whether (and to what degree) associations would have been detected if SNP ...
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Association of single nucleotide polymorphism rs6983267 with the risk of prostate cancer
... rs6983267 polymorphism and risk of prostate cancer to clarify the impact of this ...between single-nucleotide variation and Prostate ...integrated analysis about previous researches, we did ...
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A functional single nucleotide polymorphism of SET8 is prognostic for breast cancer
... role in breast cancer progression by inducing cancer cell proliferation and migration. This implication needs further in-depth functional experimental research to investigate and help understand the complicated mechanism ...
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Genome-Wide Single-Nucleotide Polymorphism Map for Candida albicans
... Karyotypic analysis has shown that strain RM1000 carries two differently sized chromosome 5 homologues, whereas its progenitor strain, CAI4, carries chromosome 5 homologues of the same ...
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Reconstituting the Frequency Spectrum of Ascertained Single-Nucleotide Polymorphism Data
... ABSTRACT Most of the available SNP data have eluded valid population genetic analysis because most population genetical methods do not correctly accommodate the special discovery process used to identify SNPs. ...
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Usefulness of Single Nucleotide Polymorphism Data for Estimating Population Parameters
... of 10 individuals appears sufficient, in the high-⌰ case, Finally, the more divergent the population on which to give results nearly as good as those obtained by choos- SNPs are defined is from the population under ...
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Single-Nucleotide-Polymorphism-Based Association Mapping of Dog Stereotypes
... ABSTRACT Phenotypic stereotypes are traits, often polygenic, that have been stringently selected to conform to specific criteria. In dogs, Canis familiaris, stereotypes result from breed standards set for conformation, ...
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